View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18421_high_17 (Length: 406)

Name: NF18421_high_17

Description: NF18421

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18421_high_17

[»] chr4 (2 HSPs)

[»] chr6 (1 HSPs)

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 63; E-Value: 3e-27

Query Start/End: Original strand, 185 - 283

Target Start/End: Complemental strand, 32289980 - 32289882

Alignment:

Q	185	tggttaaagctctaaaataagtaagtttagattaaatacaaataactactagtagtaaggtgtaatatactgccatcgatgatccatggcgaatatatt	283	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|
T	32289980	tggttaaagctctaaaataagtaagtttgcattaaatacaaataactactagcagtagggtgtaatataccgccttcgatgatctatgcagaatatatt	32289882	T

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Target: chr4; HSP #2

Raw Score: 43; E-Value: 0.000000000000002

Query Start/End: Original strand, 337 - 398

Target Start/End: Complemental strand, 32289760 - 32289694

Alignment:

Q	337	tattgtgcatcatagcaaataaagaaggtaaacaa-----gtatgcaataagtctgatgttcatctc	398	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	32289760	tattgtgcatcatagcaaataaagaaggtaaacaagtactgtatgcaataagtctgatgctcatctc	32289694	T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 171 - 212

Target Start/End: Original strand, 29694291 - 29694332

Alignment:

Q	171	tgcccttaggtcattggttaaagctctaaaataagtaagttt	212	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29694291	tgcccttaggacattggttaaagtactaaaataagtaagttt	29694332	T

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