View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_18 (Length: 389)
Name: NF18421_high_18
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 41897070 - 41896697
Alignment:
| Q |
1 |
tagcatgggtggcatgcttatctagaggtcggattgacaatgttaactatgcatacaagcaaatcagcaaaactgatttattgtttagagtcttcagtgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41897070 |
tagcatgggtggcatgcttatctagaggtcggattgacaatgttaactatgcatacaagcaaatcagcaaaactgatttattgtttagagtcttcagtgc |
41896971 |
T |
|
| Q |
101 |
acttggtcaaatctcatttgcattttctggccaagcagtgacactagaaattcaggctacaattccatcaacacctgagaaaccttcaaagataccaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41896970 |
acttggtcaaatctcatttgcattttctggccaagcagtgacactagaaattcaggctacaattccatcaacacctgagaaaccctcaaagataccaatg |
41896871 |
T |
|
| Q |
201 |
tggaaaggtgctatttgtgcctatttaatcaatgcaatatgctatttccctgttgcaaccttaggatattgggcttttggacaagatgttgacgataaca |
300 |
Q |
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| T |
41896870 |
tggaaaggtgctatttgtgcctatttaatcaatgcaatatgctatttccctgttgcaaccttaggatattgggcttttggacaagatgttgatgataaca |
41896771 |
T |
|
| Q |
301 |
tacttatgtcacttgaaagaccttcatggcttgttgcttctgctaatttgatggtattcatcaatgttcttggt |
374 |
Q |
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| T |
41896770 |
tacttatgtcacttgaaagaccttcatggcttgttgcttctgctaatttgatggtattcatcaatgttcttggt |
41896697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 41891494 - 41891121
Alignment:
| Q |
1 |
tagcatgggtggcatgcttatctagaggtcggattgacaatgttaactatgcatacaagcaaatcagcaaaactgatttattgtttagagtcttcagtgc |
100 |
Q |
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| T |
41891494 |
tagcatgggtggcttgcttacctagaggccggattgacaatgttagctatgcatacaaaccaatcagcaaaactgatttattgttcagagtcttcaatgc |
41891395 |
T |
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| Q |
101 |
acttggtcaaatctcatttgcattttctggccaagcagtgacactagaaattcaggctacaattccatcaacacctgagaaaccttcaaagataccaatg |
200 |
Q |
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|||||||||||| |||||||||||| ||||||| |||||||| || |||||||| ||||| ||||||||||||||||| ||||| ||||||||| ||||| |
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| T |
41891394 |
acttggtcaaatatcatttgcatttgctggccatgcagtgacccttgaaattcaagctacgattccatcaacacctgaaaaaccatcaaagatagcaatg |
41891295 |
T |
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| Q |
201 |
tggaaaggtgctatttgtgcctatttaatcaatgcaatatgctatttccctgttgcaaccttaggatattgggcttttggacaagatgttgacgataaca |
300 |
Q |
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| T |
41891294 |
tggaatggtgctatttgtgcctatttcatcaatgcaatatgttatttcccagttgcaatcattggatattggacttttggacaagatgttaatgataata |
41891195 |
T |
|
| Q |
301 |
tacttatgtcacttgaaagaccttcatggcttgttgcttctgctaatttgatggtattcatcaatgttcttggt |
374 |
Q |
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|||| ||||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||| ||||| ||||| |
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| T |
41891194 |
tactaatgtcacttgaaaaaccttcatggcttattgcctctgctaacttgatggtattcatccatgttgttggt |
41891121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 91 - 361
Target Start/End: Original strand, 22550530 - 22550800
Alignment:
| Q |
91 |
tcttcagtgcacttggtcaaatctcatttgcattttctggccaagcagtgacactagaaattcaggctacaattccatcaacacctgagaaaccttcaaa |
190 |
Q |
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|||||| ||||||||||||||| |||||||||||| ||||||| ||||| |||| |||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
22550530 |
tcttcaatgcacttggtcaaatttcatttgcatttgctggccatgcagtagcacttgaaattcaagcaacaattccatcaacacctgagaaaccatcaaa |
22550629 |
T |
|
| Q |
191 |
gataccaatgtggaaaggtgctatttgtgcctatttaatcaatgcaatatgctatttccctgttgcaaccttaggatattgggcttttggacaagatgtt |
290 |
Q |
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|||||||||||||||||||||||| |||||||| | || ||||||||||| |||||||| |||||| | ||||||||||| |||||| ||||||| |
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| T |
22550630 |
aataccaatgtggaaaggtgctattggtgcctatgtcataaatgcaatatgttatttcccagttgcacttattggatattgggcatttggaagagatgtt |
22550729 |
T |
|
| Q |
291 |
gacgataacatacttatgtcacttgaaagaccttcatggcttgttgcttctgctaatttgatggtattcat |
361 |
Q |
| |
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|| ||||| | |||||||||||||||||||| | ||||| |||| |||||||| |||||||||||||| |
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| T |
22550730 |
gaagataatgtgcttatgtcacttgaaagaccagcttggctcattgcctctgctaacttgatggtattcat |
22550800 |
T |
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