View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_19 (Length: 385)
Name: NF18421_high_19
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 47644664 - 47645020
Alignment:
| Q |
19 |
attcattcgactcaacacccatctcagtatgtctgtatcatcaaattgcaatatgattatatatagacacttttttatctatataaagctacggacataa |
118 |
Q |
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| T |
47644664 |
attcattcgactcaacacccatctcagtatgtttgtatcatcaaattgcaatatgattatatatagacacttttttttctatataaagctacggacataa |
47644763 |
T |
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| Q |
119 |
tgctttagagaattagcttgacattgttgtttttagatgatatcactgctcttcattatgcattaatcagtgttctcgttgcggaaaaaatagggacaag |
218 |
Q |
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| T |
47644764 |
tgctttagagaattagcttgacattgttgtttttagatgatatcactgctcttcattatgcattaatcagtgttctcgttgcggaaaaaatagggacaag |
47644863 |
T |
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| Q |
219 |
gttttgatgcatattgttggttctaaaatatggtaccttacaataatacagtaatgttacttgtgtaggcttgtcacagggtacatggcgcccttagtag |
318 |
Q |
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| T |
47644864 |
gttttgatgcatattgttggttctaaaatatggtaccttacaataatacagtaatgttacttgtgtaggcttgtcacagggtacatggcgcccttagtag |
47644963 |
T |
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| Q |
319 |
aatcattagaacagcttggttacatagatggtcagaatctgtttggagctccctatg |
375 |
Q |
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| T |
47644964 |
aatcattagaacagcttggttacatagatggtcagaatctgtttggagctccctatg |
47645020 |
T |
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