View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_2 (Length: 837)
Name: NF18421_high_2
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_2 |
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| [»] scaffold1079 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 688
Target Start/End: Complemental strand, 40231294 - 40230588
Alignment:
| Q |
1 |
gactgaggagagggttatgtggaaaggatgaagaaaagaaaacctatgaatctgctactaagatgaaaggcacaaatttcctcttaaaaggacaataccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40231294 |
gactgaggagagggttatgtggaaaggatgaagaaaagaaaacctatgaatctgctactaagatgaaaggcacaaatttcctcttaaaaggacaagaccc |
40231195 |
T |
|
| Q |
101 |
ttttcctatcctctc----------------ttcaattttttattattcacttacatacactttgataatctactctctctaactactggaggctactat |
184 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40231194 |
ttttcctctcctctccccttcctctcctctcttcaattttttattattcacttacatacactttgataatctactctctctaactactggaggctactat |
40231095 |
T |
|
| Q |
185 |
tgctaacatgttcaaaattaactattgctccatgtgttaaaggcattccagttgatctttgattcgacgttaaaagtgtattgannnnnnncccaataac |
284 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40231094 |
tgctaacatgttcaaaattaactattgctccatttgttaaaggcattccagttgatctttgattcgacgttaaaagtgtattgatttttttcccaataac |
40230995 |
T |
|
| Q |
285 |
caaatacttttgtctataaaataccacatatttcattgaactcacaaatctattttcttcccgatgagttctagtctcaataagaataacaaaaacctca |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40230994 |
caaatacttttgtctataaaataccacatatttcattgaactcacaaatctattttcttcccgatgagttctagtctcaataagaataacaaaaacctca |
40230895 |
T |
|
| Q |
385 |
caatatgaaaggcacaaatttcctctaaaaaggacaacatgccttttcttctcttctcattaattatttacttaaaaacatacattgtgataccctaacc |
484 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40230894 |
caatatgaaaggcacaaatttcctctaaaaaggacaacatgccttttcttctcttctcattaattatttacttaaaaacatacattgtgataccctaacc |
40230795 |
T |
|
| Q |
485 |
tctctaactacttgagtctactaaattacgaactaattgggtggggttacctaacatgttcttgttgcccctgcagcaaaactgaaatttatgatagtca |
584 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40230794 |
tctctaaccacttgaatctactaaattacgaactaattgggtggggttacctaacatgtttttgttgcccctgcagcaaaactgaaatttatgatagtca |
40230695 |
T |
|
| Q |
585 |
aatgcagagaaaaaggaagtaccaaagtaggaagtgatagagacaattagaagaatctagcaacatcaata--caaaacaactatgaagatcgac-acca |
681 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| |
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| T |
40230694 |
aatgcagagaaaaaggaagtaccaaagtaggaagtgatagagacaattagaagaatctagcaacatcaataacaaaaaaaactatgaagatcgacaacca |
40230595 |
T |
|
| Q |
682 |
aaagcaa |
688 |
Q |
| |
|
||||||| |
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|
| T |
40230594 |
aaagcaa |
40230588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 737 - 837
Target Start/End: Complemental strand, 40230499 - 40230399
Alignment:
| Q |
737 |
ccctcattcagatatcagacaagctaaaaatcgaaatctccataattgaatagttccaataagctacagaaggagcaagagagatgaatcagaaccctag |
836 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
40230499 |
ccctcattcagatatcagacacgctaaaaatcgaaatctccataattgaatagttccaataagctatagcaggagcaagagagatgaatcagaaccctag |
40230400 |
T |
|
| Q |
837 |
c |
837 |
Q |
| |
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| |
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| T |
40230399 |
c |
40230399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 276 - 372
Target Start/End: Original strand, 16899537 - 16899632
Alignment:
| Q |
276 |
cccaataaccaaatacttttgtctataaaataccacatatttcattgaactcacaaatctattttcttcccgatgagttctagtctcaataagaata |
372 |
Q |
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|||||||||| ||||||||||||| |||| || ||||||| ||| | ||| ||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
16899537 |
cccaataaccgaatacttttgtctgtaaa-tattgcatattttattccattcataaatctattttcttccctatgagttctagtctcaatacgaata |
16899632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 276 - 372
Target Start/End: Original strand, 18348052 - 18348147
Alignment:
| Q |
276 |
cccaataaccaaatacttttgtctataaaataccacatatttcattgaactcacaaatctattttcttcccgatgagttctagtctcaataagaata |
372 |
Q |
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|||||||||| ||||||||||||| |||| || ||| ||| ||| | ||| ||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
18348052 |
cccaataaccgaatacttttgtctgtaaa-tattgcattttttattccattcataaatctattttcttccctatgagttctagtctcaatacgaata |
18348147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 6352403 - 6352319
Alignment:
| Q |
287 |
aatacttttgtctataaaataccacatatttcattgaactcacaaatctattttcttcccgatgagttctagtctcaataagaata |
372 |
Q |
| |
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||||||||||||| |||| || |||||||| ||| | ||| ||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
6352403 |
aatacttttgtctgtaaa-tattacatattttattccattcataaatctattttcttccctatgagttctagtctcaatacgaata |
6352319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 276 - 372
Target Start/End: Complemental strand, 13236439 - 13236344
Alignment:
| Q |
276 |
cccaataaccaaatacttttgtctataaaataccacatatttcattgaactcacaaatctattttcttcccgatgagttctagtctcaataagaata |
372 |
Q |
| |
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|||||||||| ||||||||||||| |||| || ||| ||| ||| | ||| ||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
13236439 |
cccaataaccgaatacttttgtctgtaaa-tattgcattttttattccattcataaatctattttcttccctatgagttctagtctcaatacgaata |
13236344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 36013588 - 36013549
Alignment:
| Q |
5 |
gaggagagggttatgtggaaaggatgaagaaaagaaaacc |
44 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |
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| T |
36013588 |
gaggagagggttatgtggaaaggatgacgaaaagaaaacc |
36013549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 597 - 638
Alignment:
| Q |
330 |
aaatctattttcttcccgatgagttctagtctcaataagaat |
371 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
597 |
aaatctattttcttccctatgagttcgagtctcaataagaat |
638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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