View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_22 (Length: 381)
Name: NF18421_high_22
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 31201055 - 31201406
Alignment:
| Q |
16 |
ataccatatgatatcatactataatgacaatgtaattaatttgttatcaagtgcaaaccaaaatcatgataggatgagatctgtggtcatataaatgtca |
115 |
Q |
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| T |
31201055 |
ataccatatgatatcatactataatgacaatgtaattaatttgttatcaagtgcaaaccaaaatcatgataggatgagatctgtggtcatataaatgtca |
31201154 |
T |
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| Q |
116 |
attttcacctgtgtccggagatcctactaggactacc-cgtttagtttgagaccctcggatgctgattttttccgtggttaccaagatagggaaaactga |
214 |
Q |
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| T |
31201155 |
attttcacctgtgtccggagatcctactaggactacctcgtttagtttgagaccctcggatgctgattttttccgtggttaccaagatagggaaaactga |
31201254 |
T |
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| Q |
215 |
ttggagtaggactaattattcttgttatatataaacaggaagctaattggagccagattcttcagcaatgcttacgaggcatacagtgacaagcttccct |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31201255 |
ttggagtaggactaattattcttgttatatataaacaggaagctaattggagccagattcttcagcaatgcttacgaggcatacaatgacaagcttccct |
31201354 |
T |
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| Q |
315 |
catggcaacgtaccgcacgcgactttttaggccacggtactcatactctatc |
366 |
Q |
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| T |
31201355 |
catggcaacgtaccgcacgcgactttttaggccacggtactcatactctatc |
31201406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 250 - 366
Target Start/End: Complemental strand, 31063878 - 31063762
Alignment:
| Q |
250 |
caggaagctaattggagccagattcttcagcaatgcttacgaggcatacagtgacaagcttccctcatggcaacgtaccgcacgcgactttttaggccac |
349 |
Q |
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|||||||||||||||||||||||| |||||| ||||||| ||| ||| | || ||| |||||| ||| ||| ||||| ||||| |||||| |||| ||| |
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| T |
31063878 |
caggaagctaattggagccagatttttcagcgatgcttatgagcgatataatggcaaacttcccacatcgcagcgtacagcacgtgactttgtaggtcac |
31063779 |
T |
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| Q |
350 |
ggtactcatactctatc |
366 |
Q |
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| T |
31063778 |
ggtactcatacactatc |
31063762 |
T |
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