View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_27 (Length: 356)
Name: NF18421_high_27
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 36808104 - 36808433
Alignment:
| Q |
11 |
cataggtattaacatgattgccataaaacaattgctagtgaattatgattcactcagtccattaacatggaatgaaagtatatctactttgagtgattgt |
110 |
Q |
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| T |
36808104 |
cataggtattaacatgattgccataaaacaattgctagtgaattatgattcactcagtccattaacatggaatgaaaatatatctactttgagtgattgt |
36808203 |
T |
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| Q |
111 |
tcttcttttctgccactttggttgtctgaagctgacatgtattttacattgctttccctatgtgttggaagtaaattccaaaccacaaaaagctaacaat |
210 |
Q |
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| T |
36808204 |
tcttcttttctgccactttggttgtttgaagctgacatgtattttacattgctttccctatgtgttggaagtaaattccaaaccacaaaaagctaacaat |
36808303 |
T |
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| Q |
211 |
taccttattgtaccagttttgagttccgccttcgagtgtctcttacaacagatggagacctaaccctgatatcacgagtgaggaatatcaatgccaagcc |
310 |
Q |
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| T |
36808304 |
taccttattgtaccagttttgagttccgccttcgagtgtctcttacaacagatggagacctaaccctgatatcacgagtgaggaatatcaatgccaagcc |
36808403 |
T |
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| Q |
311 |
atttagtttctcattcgcataccacacata |
340 |
Q |
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| T |
36808404 |
atttagtttctcatttgcataccacacata |
36808433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 217 - 340
Target Start/End: Original strand, 48278030 - 48278153
Alignment:
| Q |
217 |
attgtaccagttttgagttccgccttcgagtgtctcttacaacagatggagacctaaccctgatatcacgagtgaggaatatcaatgccaagccatttag |
316 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||| | |||||| ||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
48278030 |
attgtaccagttttgagttccggcttcgagtgtcgcttacaacaaacggagacataaccctgatatcacgagtcaggaatatcaatggcaagccatttag |
48278129 |
T |
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| Q |
317 |
tttctcattcgcataccacacata |
340 |
Q |
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| T |
48278130 |
tttctcattcgcataccacacata |
48278153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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