View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_28 (Length: 355)
Name: NF18421_high_28
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 108 - 338
Target Start/End: Complemental strand, 20844306 - 20844083
Alignment:
| Q |
108 |
ttgtaggaatcgtagataaaataaccttatgcacgttacattcataatttttcattctcctaactatatgcaacatgtagataggtggttgtggnnnnnn |
207 |
Q |
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| T |
20844306 |
ttgtaggaatcgtgaataaaataaccttatgcacgttacattcataatttttcattcacctaactatatgcaacatgtagataggtggttgtggaatgaa |
20844207 |
T |
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| Q |
208 |
nnnnnnnncaagatctttgaaagaatttagtagcgttataactgaaactttgaagttcctctacctttgctagccaaccattacctgagtcacctcttgt |
307 |
Q |
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| T |
20844206 |
aa------ctagatttttgaaagaatttagtagcgttataactgaaactttgaagttc-tccacctttgctagccaaccattacctgagtcacctcttgt |
20844114 |
T |
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| Q |
308 |
gataagtcacttggatatggaagtgataaat |
338 |
Q |
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| T |
20844113 |
tataagtcacttggatatggaagtgataaat |
20844083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 20844388 - 20844337
Alignment:
| Q |
57 |
agtccaaac-ttttgtccaactctagaaaagcaagacaattatgcatgtggt |
107 |
Q |
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| T |
20844388 |
agtccaaaccttttgtccaactttagaaaagcaagacaattatgcatgtggt |
20844337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 20844761 - 20844722
Alignment:
| Q |
16 |
acaaaagggagaagagcaattttctagtcgtaatcaatac |
55 |
Q |
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| T |
20844761 |
acaaaagggagaagagcaattttctagtcataatcaatac |
20844722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 8467165 - 8467198
Alignment:
| Q |
122 |
gataaaataaccttatgcacgttacattcataat |
155 |
Q |
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| T |
8467165 |
gataaaataaccttatgaacgttacattcataat |
8467198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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