View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_30 (Length: 344)
Name: NF18421_high_30
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 3 - 329
Target Start/End: Original strand, 28864606 - 28864932
Alignment:
| Q |
3 |
caacacagaagatcaaaatcatgcccatggtgatgaggtaaatgcaatggaaaaagttcaagatgaaacactgtaaatgaaacactgcaaagaattatct |
102 |
Q |
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| T |
28864606 |
caacacagaagatcaaaatcatgcccatggtgatgaggtaaatgcaatggaaaaagtgcaaggtgaaacactgtaaatgaaacactgcaaagaattatct |
28864705 |
T |
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| Q |
103 |
acaagacttaattagttcaactttttagagtatgttgactatgttctctctttgtgagatgcattaccctaataattgcttgttgctttgtgccaaagtt |
202 |
Q |
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| T |
28864706 |
acaagacttaattagttcaactttttagagtatgttgactatgttctctctttgtgagatgcattaccctaataattgcttgttgctttgtgccaaagtt |
28864805 |
T |
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| Q |
203 |
tcctgggaattgcatgaatttcttaatagatgatatatacagttggctaaaagagcctttgttattgttagaattaagatcattaaggcattagacaaag |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28864806 |
tcctgggaattgcatgaatttcttaatagatgatatatacagttagctaaaagagcctttgttattgttagaattaagatcattaaggcattagacaaag |
28864905 |
T |
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| Q |
303 |
aatgtattaacgtaatttcttgttggt |
329 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
28864906 |
aatgtattaacgtaatttcttgatggt |
28864932 |
T |
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