View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_35 (Length: 317)
Name: NF18421_high_35
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_35 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 6 - 317
Target Start/End: Original strand, 39850830 - 39851141
Alignment:
| Q |
6 |
atattaagagtcactcttcaccgaactgatgcataaaatatatatttggctttgttgacttgaataactaagccattctcatctattaaagcttcataag |
105 |
Q |
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| T |
39850830 |
atattaaaagtcactcttcgccgaaccgatgcataaaatatatctttagctttgttgacttgaataactaagccattctcatctattaaagcttcataag |
39850929 |
T |
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| Q |
106 |
taacaacacctggttttacacctttcatcatcacaaccaacacattcatagattctttcaattttctttcattacaatttacaaatagcaccaaccaata |
205 |
Q |
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| T |
39850930 |
taacaacacctggttttacacctttcatcatcacaaccaacacattcatagattctttcaattttctttcattacaatttacaaatagcaccaaccaata |
39851029 |
T |
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| Q |
206 |
tatagtaaaagtataaattatgttgatgtttcttaatacaatttgatgcaaaatccataaattaaaagaattgaaaatgacaacattgagatgattttct |
305 |
Q |
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| T |
39851030 |
tatagtaaaagtataaattatgttgatgtttcttaatacaatttgatgcaaaatccataaattaaaagaattgaaaatgacaacattgagatgattttct |
39851129 |
T |
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| Q |
306 |
ttgcaaccatta |
317 |
Q |
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| T |
39851130 |
ttgcaaccatta |
39851141 |
T |
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