View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_37 (Length: 279)
Name: NF18421_high_37
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_37 |
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| [»] scaffold0444 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 6200543 - 6200285
Alignment:
| Q |
14 |
cttcatgtgttacgttgaaaaaacatgacacagttttggatcaggttgagtattgtactggtgtacgagtgcaaatcatggcatgatccagggaattatg |
113 |
Q |
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| T |
6200543 |
cttcatgtgttacgttgaaaaaacatgacacggttttggatcaggttgagtattgtactggtgtacgagtgcaaatcatggcatgatccaaggaattatg |
6200444 |
T |
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| Q |
114 |
gcacatatttcttggaactgaaacattataaaatcactatttgacccatttgttgaggtagcttgagaatttcatgcaaaccaaaggaaacgtttatgga |
213 |
Q |
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| T |
6200443 |
gcacatatttcttggaactgaaatattataaaattactatttgacccatttgttgaggtagcttgagaatttcatgcaaaccaaaggaaacgtttatgga |
6200344 |
T |
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| Q |
214 |
acttagaggctaatagttgagttgagtttctttgggtgcaattcaaatgttgatgatgt |
272 |
Q |
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| T |
6200343 |
acttagaggctaatagttgagttgagtttctttgggtgcaattcaaatgttgaagatgt |
6200285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 44427946 - 44427893
Alignment:
| Q |
145 |
aatcactatttgacccatttgttgaggtagcttgagaatttcatgcaaaccaaa |
198 |
Q |
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| T |
44427946 |
aatcactatttcacccatttgtttagtgagcttgagaatatcatggaaaccaaa |
44427893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 28 - 272
Target Start/End: Complemental strand, 43364075 - 43363833
Alignment:
| Q |
28 |
ttgaaaaaacatgacacagttttggatcaggttgagtattgtactggtgtacgagtgcaaatcatggcatgatccagggaattatggcacatatttcttg |
127 |
Q |
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| T |
43364075 |
ttgagaaatcatgacacaattttggatcaggttgagtattgtactagtgtacgagtgcaaatcatggcacgatccagggaattgtggcacatatttccta |
43363976 |
T |
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| Q |
128 |
gaactgaaacattataaaatcactatttgacccatttgttgaggtagcttgagaatttcatgcaaaccaaagga---aacgtttatggaacttagaggct |
224 |
Q |
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| T |
43363975 |
gatttgcaacattataaaatcactatttgacccattttttgaggtagcttgagaatttcatgcaaatgaaaggagcgaacgtttatggaacttagaggct |
43363876 |
T |
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| Q |
225 |
aatagttgagttgagtttctttgggtgcaattcaaatgttgatgatgt |
272 |
Q |
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| T |
43363875 |
aa-----gagttgagtttctttgggtgcaattcaaatgttgaagatgt |
43363833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 181
Target Start/End: Complemental strand, 9336103 - 9335969
Alignment:
| Q |
47 |
ttttggatcaggttgagtattgtactggtgtacgagtgcaaatcatggcatgatccagggaattatggcacatatttcttggaactgaaacattataaaa |
146 |
Q |
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| T |
9336103 |
ttttggattaggttgagtattaaactggtgtaggagtgcaaattgtggcacgatctaggaaattgtggcacaattttcctagatcagaaacagtataaaa |
9336004 |
T |
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| Q |
147 |
tcactatttgacccatttgttgaggtagcttgaga |
181 |
Q |
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| T |
9336003 |
gcactcgttgacccatttgttgaggtatcttgaga |
9335969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0444
Description:
Target: scaffold0444; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 11072 - 11019
Alignment:
| Q |
145 |
aatcactatttgacccatttgttgaggtagcttgagaatttcatgcaaaccaaa |
198 |
Q |
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| T |
11072 |
aatcactatttcacccatttgtttagtgagcttgagaatatcatggaaaccaaa |
11019 |
T |
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