View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_40 (Length: 267)
Name: NF18421_high_40
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_40 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 40208519 - 40208271
Alignment:
| Q |
19 |
cagttaccccagccatggttccatcaatctttttatttcctataacttttccaataccaaggccaagaccaattgtggagtatgtaaaggacataacagc |
118 |
Q |
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| T |
40208519 |
cagttaccccagccatggttccatcaatctttttatttcctataacttttccaataccaaggccaagaccaattgtggagtatgtaaaggacataacagc |
40208420 |
T |
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| Q |
119 |
ggctaaactggagagccaccacaattgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgctattcatg |
218 |
Q |
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| T |
40208419 |
agctaaactggagagccaccacaattgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgcttttcatg |
40208320 |
T |
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| Q |
219 |
tgacatggatcttttccaccacttctatggaaacaatttgacctttcaa |
267 |
Q |
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| T |
40208319 |
tgacatggatcttttccaccacttctatggaaacaatttgacctttcaa |
40208271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 40200885 - 40200637
Alignment:
| Q |
19 |
cagttaccccagccatggttccatcaatctttttatttcctataacttttccaataccaaggccaagaccaattgtggagtatgtaaaggacataacagc |
118 |
Q |
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| T |
40200885 |
cagttaccccagccatggttccatcaatctttttatttcctataacttttccaataccaaggccaagaccaattgtggagtatgtaaaggacataacagc |
40200786 |
T |
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| Q |
119 |
ggctaaactggagagccaccacaattgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgctattcatg |
218 |
Q |
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| T |
40200785 |
agctaaactggagagccaccataattgatcaaaatctggaatttgagagaatataatttgtactgcaccaaatgaaatcatgtaaatattgctgttcatg |
40200686 |
T |
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| Q |
219 |
tgacatggatcttttccaccacttctatggaaacaatttgacctttcaa |
267 |
Q |
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| T |
40200685 |
tgacatggatcttttcccccacttctatggaaacaatttgacctttcaa |
40200637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 57 - 267
Target Start/End: Complemental strand, 40204348 - 40204138
Alignment:
| Q |
57 |
cctataacttttccaataccaaggccaagaccaattgtggagtatgtaaaggacataacagcggctaaactggagagccaccacaattgatcaaaatctg |
156 |
Q |
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| T |
40204348 |
cctataactttcccaataccaaggccaaggccaattgtggagtatataaaggacataacagtagctaaactggagagccaccatatttgatcaaaatctg |
40204249 |
T |
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| Q |
157 |
gaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgctattcatgtgacatggatcttttccaccacttctatggaaacaatt |
256 |
Q |
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| T |
40204248 |
gaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgctattcatgtgacatggatcttttccaccacttctatggaaacaatt |
40204149 |
T |
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| Q |
257 |
tgacctttcaa |
267 |
Q |
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| T |
40204148 |
tgacctttcaa |
40204138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 44315679 - 44315716
Alignment:
| Q |
129 |
gagagccaccacaattgatcaaaatctggaatttgaga |
166 |
Q |
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| T |
44315679 |
gagagccaccacattttatcaaaatctggaatttgaga |
44315716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 264
Target Start/End: Original strand, 10299226 - 10299433
Alignment:
| Q |
57 |
cctataacttttccaataccaaggccaagaccaattgtggagtatgtaaaggacataacagcggctaaactggagagccaccacaattgatcaaaatctg |
156 |
Q |
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| T |
10299226 |
cctataactttaccgataccaagaccgaggccaatagttgagtatgtgaaggacataacagcagctagagcagagagccaccataactgatcaaagtcag |
10299325 |
T |
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| Q |
157 |
gaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgctattcatgtgacatggatcttttccaccacttctatggaaacaatt |
256 |
Q |
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| T |
10299326 |
gaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatgtttccattcatgtggcatggattttttccaccactgctgtggaaacaatt |
10299425 |
T |
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| Q |
257 |
tgaccttt |
264 |
Q |
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| T |
10299426 |
agaccttt |
10299433 |
T |
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