View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18421_high_47 (Length: 249)

Name: NF18421_high_47
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18421_high_47
NF18421_high_47
[»] chr7 (15 HSPs)
chr7 (12-249)||(27148782-27149024)
chr7 (73-224)||(26201781-26201928)
chr7 (80-161)||(11735188-11735269)
chr7 (84-165)||(33497095-33497176)
chr7 (86-227)||(42610576-42610712)
chr7 (95-224)||(12740779-12740904)
chr7 (86-215)||(44256418-44256542)
chr7 (97-168)||(31174723-31174794)
chr7 (117-224)||(43172116-43172219)
chr7 (86-224)||(14741388-14741521)
chr7 (86-186)||(48136891-48136986)
chr7 (86-168)||(6268515-6268596)
chr7 (96-222)||(14732309-14732431)
chr7 (86-224)||(37328316-37328449)
chr7 (63-164)||(23017010-23017111)
[»] chr4 (23 HSPs)
chr4 (77-214)||(871782-871914)
chr4 (74-224)||(55165487-55165633)
chr4 (64-224)||(29510051-29510207)
chr4 (86-168)||(26491131-26491212)
chr4 (96-217)||(6487335-6487452)
chr4 (82-132)||(24453930-24453980)
chr4 (86-160)||(29469185-29469258)
chr4 (170-222)||(21486479-21486531)
chr4 (97-168)||(23671392-23671463)
chr4 (105-168)||(33138814-33138877)
chr4 (68-160)||(41725584-41725676)
chr4 (86-160)||(8084231-8084304)
chr4 (96-215)||(49501199-49501314)
chr4 (96-215)||(49507264-49507379)
chr4 (86-168)||(50517207-50517288)
chr4 (86-217)||(51967246-51967372)
chr4 (86-224)||(5800375-5800508)
chr4 (170-222)||(25013410-25013462)
chr4 (170-222)||(26448595-26448647)
chr4 (170-222)||(29966469-29966521)
chr4 (99-224)||(32889858-32889979)
chr4 (170-222)||(40162753-40162805)
chr4 (170-222)||(40487746-40487797)
[»] chr5 (10 HSPs)
chr5 (75-224)||(16548839-16548984)
chr5 (81-214)||(29758678-29758806)
chr5 (100-214)||(29716810-29716920)
chr5 (86-224)||(5651193-5651326)
chr5 (86-224)||(7125171-7125304)
chr5 (105-225)||(21489861-21489977)
chr5 (86-222)||(33892848-33892979)
chr5 (170-222)||(16800693-16800745)
chr5 (68-224)||(1460785-1460937)
chr5 (170-222)||(34909556-34909608)
[»] chr8 (10 HSPs)
chr8 (74-225)||(7760769-7760916)
chr8 (81-225)||(17234675-17234815)
chr8 (81-168)||(37131286-37131373)
chr8 (86-214)||(8029846-8029969)
chr8 (77-186)||(24067106-24067211)
chr8 (86-224)||(26856516-26856649)
chr8 (86-160)||(19484237-19484310)
chr8 (82-132)||(35879729-35879779)
chr8 (86-224)||(9288151-9288284)
chr8 (68-214)||(10294977-10295119)
[»] chr3 (19 HSPs)
chr3 (81-224)||(7665553-7665692)
chr3 (73-224)||(45602409-45602556)
chr3 (76-186)||(25049871-25049977)
chr3 (86-224)||(4962737-4962870)
chr3 (96-224)||(21386499-21386623)
chr3 (86-161)||(33693277-33693351)
chr3 (86-224)||(8598621-8598754)
chr3 (99-225)||(43172888-43173010)
chr3 (96-222)||(9818579-9818701)
chr3 (86-224)||(48379559-48379692)
chr3 (86-224)||(49296078-49296211)
chr3 (86-215)||(20833315-20833439)
chr3 (170-222)||(30238581-30238633)
chr3 (95-224)||(39038499-39038624)
chr3 (96-168)||(49458372-49458444)
chr3 (95-224)||(52617638-52617763)
chr3 (86-160)||(53835984-53836057)
chr3 (86-224)||(51737345-51737478)
chr3 (86-215)||(50761758-50761882)
[»] chr1 (19 HSPs)
chr1 (73-224)||(49971586-49971734)
chr1 (72-222)||(52182311-52182457)
chr1 (73-214)||(27257849-27257986)
chr1 (86-224)||(9192007-9192140)
chr1 (86-224)||(47371580-47371713)
chr1 (86-168)||(5209373-5209454)
chr1 (86-224)||(4005050-4005183)
chr1 (86-224)||(5494753-5494886)
chr1 (86-224)||(45272977-45273110)
chr1 (86-160)||(1243311-1243384)
chr1 (86-168)||(35177215-35177296)
chr1 (86-160)||(41353464-41353537)
chr1 (86-224)||(8140888-8141021)
chr1 (86-224)||(51106875-51107008)
chr1 (87-224)||(48966497-48966629)
chr1 (86-160)||(11579105-11579178)
chr1 (170-224)||(37980038-37980092)
chr1 (99-168)||(3593281-3593350)
chr1 (170-222)||(18954450-18954502)
[»] chr2 (12 HSPs)
chr2 (77-166)||(15926394-15926483)
chr2 (83-166)||(32293928-32294011)
chr2 (83-161)||(32242208-32242286)
chr2 (72-187)||(1833697-1833808)
chr2 (77-123)||(3858418-3858464)
chr2 (100-224)||(31847237-31847358)
chr2 (86-168)||(38295724-38295805)
chr2 (86-224)||(18899934-18900067)
chr2 (86-168)||(40829650-40829731)
chr2 (96-161)||(37810898-37810963)
chr2 (96-168)||(15224244-15224316)
chr2 (86-166)||(18727653-18727732)
[»] chr6 (10 HSPs)
chr6 (62-165)||(13461390-13461492)
chr6 (99-224)||(16438668-16438789)
chr6 (86-224)||(1463676-1463809)
chr6 (86-224)||(6788062-6788195)
chr6 (63-168)||(31975633-31975738)
chr6 (83-222)||(8779583-8779717)
chr6 (86-217)||(31996253-31996379)
chr6 (86-224)||(2606857-2606990)
chr6 (86-224)||(3000202-3000335)
chr6 (96-168)||(31535074-31535146)
[»] scaffold1128 (1 HSPs)
scaffold1128 (86-224)||(910-1043)
[»] scaffold0013 (1 HSPs)
scaffold0013 (86-214)||(89252-89375)
[»] scaffold0246 (2 HSPs)
scaffold0246 (170-222)||(1331-1383)
scaffold0246 (170-222)||(25685-25736)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 27149024 - 27148782
Alignment:
Q  12 atgaaataggtcaaaaaattggcccaatttttcttaaaannnnnnnaggcataaactcggtcgagttt---------gaccgagttaactcgagtcaaac 102  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||| |||||||||||||         |||||||||||||| ||||||||    
T  27149024 atgaaataggtcaaaaaattggcccaatttttcttaaattttttttaggcataatctcggtcgagtttacagagtttgaccgagttaactcaagtcaaac 27148925  T
Q  103 tcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaactttacgagtt 202  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| ||||||    
T  27148924 tcgtcaaacattctgattttagctgaaattgaggttacctccgatttaacacgattttgatac----ctaaaaacgtaaactcgataaactttgcgagtt 27148829  T
Q  203 aacactcgatttgtgtaacattattcgacagacctctttcagtgttt 249  Q
    ||||||||||||||| ||||||  ||||||||||||||| |||||||    
T  27148828 aacactcgatttgtggaacattgctcgacagacctcttttagtgttt 27148782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 26201781 - 26201928
Alignment:
Q  73 cgagtttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagcta 172  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||  || |||||||||| || ||||||||||| |||    |||    
T  26201781 cgagtttgaccgagttaactcgagtcaaactcgtcaaacattccgattttagcaataattgagtttacctccgagtttacacgattttggtac----cta 26201876  T
Q  173 aaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    |||| ||||| ||| ||||||   | ||||||||||||||||||| ||||||    
T  26201877 aaaatgtaaattcggtaaactcggcaagttaacactcgatttgtggaacatt 26201928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 11735188 - 11735269
Alignment:
Q  80 gaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttg 161  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| | |||||| || |||||||||| ||||||||||||||    
T  11735188 gaccgagttaactcgagtcaaactcggcaaacattccgattttaccagaaatcgagtttacctccgagttaacacgattttg 11735269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 33497095 - 33497176
Alignment:
Q  84 gagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatac 165  Q
    |||||||||| |||||||||||||||||||||  |||||| | |||||| || |||||||||| || |||||||||||||||    
T  33497095 gagttaactcaagtcaaactcgtcaaacattccaattttatcagaaatcgagtttacctccgagttgacacgattttgatac 33497176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 42610712 - 42610576
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||||||||||| | |||| | || |||||||  |||||||||||||||| ||||||    || ||||||| ||    
T  42610712 gttaactcg-gtcaaactcgtcaaaccttctgattttaccagaaaccaagtttacctcaaatttaacacgattttggtaccta----aacacgtaaattc 42610618  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacattatt 227  Q
    | ||||||    |||||||||||| ||||| | |||||||||    
T  42610617 ggtaaactcagagagttaacactcaatttgcggaacattatt 42610576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 12740904 - 12740779
Alignment:
Q  95 agtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaactt 194  Q
    ||||||||||||||||| |||  |||||| | || | | || ||||||| || |||||||||||||| |||    ||||||||||||||||| ||| ||     
T  12740904 agtcaaactcgtcaaaccttccaattttaccagacaccgagtttacctcagagttaacacgattttggtac----ctaaaaacgtaaactcggtaatctc 12740809  T
Q  195 tacgagttaacactcgatttgtgtaacatt 224  Q
       |||||||||||||||||| ||||||||    
T  12740808 ggagagttaacactcgatttgcgtaacatt 12740779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 44256418 - 44256542
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| |||||||||||| |||| ||| ||||||| | |||||| || ||||||| || |||||||||||||      || ||||||||||||||||    
T  44256418 gttaactc-agtcaaactcgttaaaccttccgattttaccagaaatcgagtttacctcagagttaacacgatttt----tgtatctaaaaacgtaaactc 44256512  T
Q  186 gataaactttacgagttaacactcgatttg 215  Q
    ||||| ||    ||||||||||||||||||    
T  44256513 gataatctcggagagttaacactcgatttg 44256542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 31174794 - 31174723
Alignment:
Q  97 tcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    ||||||||||||||||||||||||| | |  ||| |||  ||||||||||||||||| |||||||| |||||    
T  31174794 tcaaactcgtcaaacattctgatttgaacaaaaaactattttacctccgatttaacatgattttgacaccta 31174723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 43172219 - 43172116
Alignment:
Q  117 gattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaactttacgagttaacactcgatttgt 216  Q
    ||||||| | |||||| || |||||||||| |||||| |||||||||||    ||||||| ||||||||| ||||||    ||||||||||||||||||     
T  43172219 gattttaccagaaatcgagtttacctccgagttaacatgattttgatac----ctaaaaatgtaaactcggtaaactcagagagttaacactcgatttgc 43172124  T
Q  217 gtaacatt 224  Q
    | ||||||    
T  43172123 ggaacatt 43172116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 14741521 - 14741388
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||| |||||||   |||||| || |||||||||| |||||||| ||||   ||    ||||| ||||||||||    
T  14741521 gttaactcg-gtcaaactcgtcaaactttccgattttactagaaatcgagtttacctccgagttaacacgtttttagcac----ctaaacacgtaaactc 14741427  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||||||   |||||| |||| ||||||||| ||||||    
T  14741426 ggtaaactcgccgagttgacacgcgatttgtggaacatt 14741388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 48136891 - 48136986
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| ||||||||||||||||| |||| |||||| | ||||   || ||||||| || |||||||||||||| |||    ||||||||||||||||    
T  48136891 gttaactc-agtcaaactcgtcaaaccttctaattttaccagaaactgagtttacctcagagttaacacgattttggtac----ctaaaaacgtaaactc 48136985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 6268596 - 6268515
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    ||||||||| ||||||||||||||||||||| |||| | |  ||| |||| |||| ||||| |||||||| |||||| |||||    
T  6268596 gttaactcg-gtcaaactcgtcaaacattctaatttcaccaaaaacctagtttacatccgagttaacacgtttttgacaccta 6268515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 14732309 - 14732431
Alignment:
Q  96 gtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaacttt 195  Q
    |||||||||||||||| ||| ||||| | |  ||| | || |||||||||| |||||||| |||||    | | ||||||||||||||| ||   | |||    
T  14732309 gtcaaactcgtcaaactttccgatttcaccaaaaaccaagtttacctccgagttaacacgtttttg----ccacctaaaaacgtaaacttgagcgagttt 14732404  T
Q  196 acgagttaacactcgatttgtgtaaca 222  Q
    ||| |||||||||||||||||| ||||    
T  14732405 acgtgttaacactcgatttgtggaaca 14732431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 37328449 - 37328316
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| |||||||| ||| |||| ||| ||||||| | |||||| || ||||||  || |||||||||||||  |||    ||||||||||||||||    
T  37328449 gttaactc-agtcaaacacgttaaaccttccgattttaccagaaatcgagtttaccttagagttaacacgatttttgtac----ctaaaaacgtaaactc 37328355  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    ||||| ||    |||| ||||||||||||| | ||||||    
T  37328354 gataatctcggagagtcaacactcgatttgcggaacatt 37328316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 23017111 - 23017010
Alignment:
Q  63 taaactcggtcgagtttgaccga--gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgatttt 160  Q
    ||||||||||||||||| |||||  ||||||||| |||||||||||||||  |||  ||||||   |||||| || |||||||| | ||||||| |||||    
T  23017111 taaactcggtcgagttt-accgagtgttaactcg-gtcaaactcgtcaaatcttccaattttacgagaaatcgagtttacctccaagttaacacaatttt 23017014  T
Q  161 gata 164  Q
    ||||    
T  23017013 gata 23017010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 871914 - 871782
Alignment:
Q  77 tttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaa 176  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| || |||||||||| || ||||||||| |     || |||||||    
T  871914 tttgaccgagttaactcgagtcaaactcgtcaaacattccgattttaccagaaatcgagtttacctccgagttgacacgatttgg-----tacctaaaaa 871820  T
Q  177 cgtaaactcgataaactttacgagttaacactcgattt 214  Q
    |||||||||| ||||||  |||||||||||||||||||    
T  871819 cgtaaactcggtaaactcgacgagttaacactcgattt 871782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 224
Target Start/End: Complemental strand, 55165633 - 55165487
Alignment:
Q  74 gagtttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaa 173  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||| || |||||||| | |||| ||||||||| |||     |||    
T  55165633 gagtttgatcgagttaactcgagtcaaactcgtcaaacattctgattttaccataaatcaagtttacctccaagttaatacgattttggtac----gtaa 55165538  T
Q  174 aaacgtaaactcgataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    ||||||||||||  ||||||  |||||||| ||||||||||||| ||||||    
T  55165537 aaacgtaaactcagtaaactcgacgagttagcactcgatttgtggaacatt 55165487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 29510051 - 29510207
Alignment:
Q  64 aaactcggtcgagtttgaccgagt--taactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttg 161  Q
    ||||||||| |||||| |||||||  ||||||| |||||||||||||||| ||||||||||| | |||||  || |||| || || ||||||||||||||    
T  29510051 aaactcggtagagttt-accgagtgttaactcg-gtcaaactcgtcaaaccttctgattttaccagaaattgagtttacatcagagttaacacgattttg 29510148  T
Q  162 atacctagctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    ||||    ||||| ||||||||||||||||||    |||||||||||||||||| | ||||||    
T  29510149 atac----ctaaacacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 29510207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 26491131 - 26491212
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    ||||||||| |||||||||||||||| ||||||||||| | |||| | || |||||||  |||||||||||||||| ||||||    
T  26491131 gttaactcg-gtcaaactcgtcaaaccttctgattttaccagaaaccgagtttacctcaaatttaacacgattttggtaccta 26491212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 6487335 - 6487452
Alignment:
Q  96 gtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaacttt 195  Q
    |||||||||||||||| ||| ||||| | |  ||||| || |||||||||| |||||||| |||||    | | |||||||||||||||||   || |||    
T  6487335 gtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttg----ccacctaaaaacgtaaactcgggcaagttt 6487430  T
Q  196 acgagttaacactcgatttgtg 217  Q
    ||| ||||||||||||||||||    
T  6487431 acgtgttaacactcgatttgtg 6487452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 24453980 - 24453930
Alignment:
Q  82 ccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatc 132  Q
    ||||||||||||||||||||||||||||||||||  |||||| | ||||||    
T  24453980 ccgagttaactcgagtcaaactcgtcaaacattccaattttaccggaaatc 24453930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 29469258 - 29469185
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgatttt 160  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| || |||||||||| |||||||| ||||    
T  29469258 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgttttt 29469185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 21486531 - 21486479
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    ||||||||||||||||||   | ||||||||||||||||||||||||| ||||    
T  21486531 ctaaaaacgtaaactcgaacgagtttacgagttaacactcgatttgtggaaca 21486479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 23671392 - 23671463
Alignment:
Q  97 tcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    ||||||||||||||| ||  ||||| | | |||||| || |||||||||| |||||||||||||| ||||||    
T  23671392 tcaaactcgtcaaacttttcgatttcaccagaaatcgagtttacctccgagttaacacgattttggtaccta 23671463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 33138877 - 33138814
Alignment:
Q  105 gtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    ||||||| ||| ||||||| | |||||| || |||||||||| |||||||||||||| ||||||    
T  33138877 gtcaaaccttccgattttaccagaaatcgagtttacctccgagttaacacgattttggtaccta 33138814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 41725676 - 41725584
Alignment:
Q  68 tcggtcgagtttgaccgagt--taactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgatttt 160  Q
    |||||||||||| |||||||  |||||| |||||||||||| |||| ||| ||||||| | |||||| || ||||||| || |||||||||||||    
T  41725676 tcggtcgagttt-accgagtgttaactc-agtcaaactcgttaaaccttccgattttaccagaaatcgagtttacctcagagttaacacgatttt 41725584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 8084304 - 8084231
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgatttt 160  Q
    ||||||||| |||||||||||||||| ||| |||||||   |||||| || |||||||||| |||||||| ||||    
T  8084304 gttaactcg-gtcaaactcgtcaaactttccgattttactagaaatcgagtttacctccgagttaacacgttttt 8084231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 49501199 - 49501314
Alignment:
Q  96 gtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaacttt 195  Q
    ||||||||||| |||| ||| ||||||| | |||| | || ||||||| || |||||||||||||  |||    ||||||||||||||||| ||| ||      
T  49501199 gtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacacgatttttgtac----ctaaaaacgtaaactcggtaatctcg 49501294  T
Q  196 acgagttaacactcgatttg 215  Q
      ||||||||||||||||||    
T  49501295 gagagttaacactcgatttg 49501314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 49507264 - 49507379
Alignment:
Q  96 gtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaacttt 195  Q
    ||||||||||| |||| ||| ||||||| | |||| | || ||||||| || |||||||||||||  |||    ||||||||||||||||| ||| ||      
T  49507264 gtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacacgatttttgtac----ctaaaaacgtaaactcggtaatctcg 49507359  T
Q  196 acgagttaacactcgatttg 215  Q
      ||||||||||||||||||    
T  49507360 gagagttaacactcgatttg 49507379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 50517288 - 50517207
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    ||||||||| |||||||||||||||| |||  |||||| | |||||| || |||||||  | |||||||||||||| ||||||    
T  50517288 gttaactcg-gtcaaactcgtcaaaccttccaattttaccagaaatcgagtttacctcaaagttaacacgattttggtaccta 50517207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 51967372 - 51967246
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||  ||||| | |  ||| | || |||||||||| |||||||| |||||    | | ||||||||||||||||    
T  51967372 gttaactcg-gtcaaactcgtcaaacttttcgatttcaccaaaaaccgagtttacctccgagttaacacgtttttg----ccacctaaaaacgtaaactc 51967278  T
Q  186 gataaactttacgagttaacactcgatttgtg 217  Q
    ||   | |||||| ||||||||||||||||||    
T  51967277 gaacgagtttacgtgttaacactcgatttgtg 51967246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 5800508 - 5800375
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| |||||||||||| |||| ||||||| ||| | |||| | |  ||||||| || |||||||||||||  |||    ||||||| ||||||||    
T  5800508 gttaactc-agtcaaactcgttaaaccttctgatgttaccagaaaccgaatttacctcagagttaacacgatttttgtac----ctaaaaatgtaaactc 5800414  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    ||||| ||    |||||||||||||||||| | ||||||    
T  5800413 gataatctcggagagttaacactcgatttgcggaacatt 5800375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 25013462 - 25013410
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    ||||||||||||||||||   | |||||| |||||||||||||||||| ||||    
T  25013462 ctaaaaacgtaaactcgaacgagtttacgtgttaacactcgatttgtggaaca 25013410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 26448647 - 26448595
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    ||||||| ||||||||||   | ||||||||||||||||||||||||| ||||    
T  26448647 ctaaaaatgtaaactcgagcgagtttacgagttaacactcgatttgtggaaca 26448595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 29966469 - 29966521
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    |||||||||||||||||    | ||||||||||||||||||||||||| ||||    
T  29966469 ctaaaaacgtaaactcgggcgagtttacgagttaacactcgatttgtggaaca 29966521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 32889979 - 32889858
Alignment:
Q  99 aaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaactttacg 198  Q
    ||||||||||||| ||||||||||| | |||||  || |||| ||  | |||||||||||||| ||||||    || ||||||||||| |||| |    |    
T  32889979 aaactcgtcaaaccttctgattttaccagaaattgagtttacatcaaagttaacacgattttggtaccta----aacacgtaaactcggtaaattcggag 32889884  T
Q  199 agttaacactcgatttgtgtaacatt 224  Q
    ||||||||||||||||| | ||||||    
T  32889883 agttaacactcgatttgcggaacatt 32889858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 40162805 - 40162753
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    |||||||||||||||||    | ||||||||||||||||||||||||| ||||    
T  40162805 ctaaaaacgtaaactcggacgagtttacgagttaacactcgatttgtggaaca 40162753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 40487746 - 40487797
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    |||||||||||||||| | | | ||||||||||||||||||||||||| ||||    
T  40487746 ctaaaaacgtaaactc-agagagtttacgagttaacactcgatttgtggaaca 40487797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 16548839 - 16548984
Alignment:
Q  75 agtttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaa 174  Q
    ||||||||||||||||||||||||||| ||||||||||||  ||||||| | |||||  || |||||||||| || ||||||||||| |||    |||||    
T  16548839 agtttgaccgagttaactcgagtcaaattcgtcaaacatttcgattttaccagaaattgagtttacctccgagttgacacgattttggtac----ctaaa 16548934  T
Q  175 aacgtaaactcgataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    |||||||||||||||||||  | ||||||||||||||||| || ||||||    
T  16548935 aacgtaaactcgataaactcaatgagttaacactcgatttatggaacatt 16548984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 29758806 - 29758678
Alignment:
Q  81 accgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgta 180  Q
    ||||||||||||||||||||||||||||||||||| ||||| | | |||||| |   ||||||||| |||||||||||||||||||||    ||||||||    
T  29758806 accgagttaactcgagtcaaactcgtcaaacattccgattt-accagaaatcaaatctacctccgagttaacacgattttgataccta----aaaacgta 29758712  T
Q  181 aactcgataaactttacgagttaacactcgattt 214  Q
    |||||||||||||| |||||||||||||| ||||    
T  29758711 aactcgataaacttaacgagttaacactcaattt 29758678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 29716810 - 29716920
Alignment:
Q  100 aactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaactttacga 199  Q
    |||||||||||| ||||||||||| | |||||| || |||||| ||| ||||||||||||||||||    ||||||||||||||||  |||||||   ||    
T  29716810 aactcgtcaaaccttctgattttaccagaaatcaagtttaccttcgagttaacacgattttgatac----ctaaaaacgtaaactccgtaaacttggaga 29716905  T
Q  200 gttaacactcgattt 214  Q
    |||||||||||||||    
T  29716906 gttaacactcgattt 29716920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 5651193 - 5651326
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||   |||| | | |||||| || |||||||||| |||||||||||||| |||    ||||| ||||||| ||    
T  5651193 gttaactcg-gtcaaactcgtcaaacttttcaatttcaccagaaatcgagtttacctccgagttaacacgattttggtac----ctaaacacgtaaaatc 5651287  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    ||||||||  | | |||||||||||||||| | ||||||    
T  5651288 gataaactcgaagtgttaacactcgatttgcggaacatt 5651326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 7125171 - 7125304
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| || |||||||||| |||||||| ||||   ||    ||||| ||||||||||    
T  7125171 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcac----ctaaacacgtaaactc 7125265  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||||||   |||||| |||| ||||||||| ||||||    
T  7125266 ggtaaactcgccgagttgacacgcgatttgtggaacatt 7125304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 21489977 - 21489861
Alignment:
Q  105 gtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaactttacgagttaa 204  Q
    ||||||||||| ||||||| | |||||| || ||| || ||| || ||||||||||| ||||||    |||| ||||| || |||||||| |  ||||||    
T  21489977 gtcaaacattcagattttaccagaaatcaagtttatcttcgaattgacacgattttggtaccta----aaaatgtaaaatcaataaacttgaaaagttaa 21489882  T
Q  205 cactcgatttgtgtaacatta 225  Q
    ||||||||||||| |||||||    
T  21489881 cactcgatttgtggaacatta 21489861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 33892848 - 33892979
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||| ||||| | |  ||||| || |||||||||| |||||||| |||||    | | ||||||||||||| ||    
T  33892848 gttaactcg-gtcaaactcgtcaaactttccgatttcatcaaaaatcgagtttacctccgagttaacacgtttttg----ccacctaaaaacgtaaattc 33892942  T
Q  186 gataaactttacgagttaacactcgatttgtgtaaca 222  Q
    ||   | |||||| |||||||||||||||||| ||||    
T  33892943 gaacgaatttacgtgttaacactcgatttgtgcaaca 33892979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 16800745 - 16800693
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    ||||||| |||||||||| ||| ||||||||||||||||| ||||||| ||||    
T  16800745 ctaaaaatgtaaactcgaaaaagtttacgagttaacactccatttgtggaaca 16800693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 1460785 - 1460937
Alignment:
Q  68 tcggtcgagtttgaccgagt--taactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatac 165  Q
    |||||||||||| |||||||  |||||| |||||||||||| || | ||| ||||||| | |||| | || ||||||| || ||||||| |||||  |||    
T  1460785 tcggtcgagttt-accgagtgttaactc-agtcaaactcgttaagccttccgattttaccagaaaccgagtttacctctgagttaacacaatttttgtac 1460882  T
Q  166 ctagctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaacatt 224  Q
        ||||||||||||||||| ||| ||  | |||||||||||||||||| | ||||||    
T  1460883 ----ctaaaaacgtaaactcggtaatctcaaagagttaacactcgatttgcggaacatt 1460937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 34909608 - 34909556
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    ||||||||||||||||||   | |||||| |||||||||||||||||| ||||    
T  34909608 ctaaaaacgtaaactcgagcgagtttacgtgttaacactcgatttgtggaaca 34909556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 225
Target Start/End: Complemental strand, 7760916 - 7760769
Alignment:
Q  74 gagtttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaa 173  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||| | |||||| |  |||||| ||| || |||||||||||||||    ||||    
T  7760916 gagtttgaccgagttaactcgagtcaaactcgtcaaacaatttgattttatcagaaatcaaatttaccttcgagttgacacgattttgatac----ctaa 7760821  T
Q  174 aaacgtaaactcgataaactttacgagttaacactcgatttgtgtaacatta 225  Q
    |||  |||||||  ||||||  |  ||||||||||||||||||| |||||||    
T  7760820 aaatataaactcagtaaactcgataagttaacactcgatttgtggaacatta 7760769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 81 - 225
Target Start/End: Complemental strand, 17234815 - 17234675
Alignment:
Q  81 accgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgta 180  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | |||||| || |||||||||| || | | ||||||| |||    ||||||||| |    
T  17234815 accgagttaactcgagtcaaactcgtcaaacattccgattttaccagaaatcgagtttacctccgagttgataggattttggtac----ctaaaaacgca 17234720  T
Q  181 aactcgataaactttacgagttaacactcgatttgtgtaacatta 225  Q
    |||| | ||||||   |||||||||| |||||||||  |||||||    
T  17234719 aacttggtaaactcagcgagttaacattcgatttgttgaacatta 17234675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 37131286 - 37131373
Alignment:
Q  81 accgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    |||||||||||||||||||||||| |||||||||||||||||| | ||| || || |||||||||| || ||||||||||| ||||||    
T  37131286 accgagttaactcgagtcaaactcttcaaacattctgattttaccagaagtcgagtttacctccgagttgacacgattttggtaccta 37131373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 8029846 - 8029969
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| || ||| ||| || |||||||||||||| |||    ||||| ||||||||||    
T  8029846 gttaactcg-gtcaaactcgtcaaaccttccgattttaccagaaatcgagtttatctcagagttaacacgattttggtac----ctaaacacgtaaactc 8029940  T
Q  186 gataaactttacgagttaacactcgattt 214  Q
    ||||||||  | |||||||||||||||||    
T  8029941 gataaactcgaagagttaacactcgattt 8029969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 24067211 - 24067106
Alignment:
Q  77 tttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaa 176  Q
    |||||||||||||||||||||| |||||||||||||| | ||||||| | |||||  || | |||||||| || ||||||||||| |||    |||||||    
T  24067211 tttgaccgagttaactcgagtcgaactcgtcaaacatgccgattttaccagaaattgagttcacctccgagttgacacgattttggtac----ctaaaaa 24067116  T
Q  177 cgtaaactcg 186  Q
    ||||||||||    
T  24067115 cgtaaactcg 24067106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 26856649 - 26856516
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| |||||||||||| |||| ||||||||||| | |||| | || ||||||| || |||||||||||||  |||    ||| |||| |||||||    
T  26856649 gttaactc-agtcaaactcgttaaaccttctgattttaccagaaaccgagtttacctcagagttaacacgatttttgtac----ctataaacataaactc 26856555  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||| ||    |||||||||||||||||||||||||||    
T  26856554 ggtaatctcggagagttaacactcgatttgtgtaacatt 26856516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 19484310 - 19484237
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgatttt 160  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| || |||||||||| |||||||| ||||    
T  19484310 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgttttt 19484237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 35879779 - 35879729
Alignment:
Q  82 ccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatc 132  Q
    ||||||||||||||||||||||||||||||||||  |||||| | ||||||    
T  35879779 ccgagttaactcgagtcaaactcgtcaaacattccaattttaccggaaatc 35879729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 9288151 - 9288284
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| |||||||||||| |||| |||  |||||| | |||| | |  ||||||| || |||||||||||||  |||    ||||||||||||||||    
T  9288151 gttaactc-agtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtac----ctaaaaacgtaaactc 9288245  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||| ||  | |||||||||||||||||| | ||||||    
T  9288246 ggtaatctcgaagagttaacactcgatttgcggaacatt 9288284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 10294977 - 10295119
Alignment:
Q  68 tcggtcgagtttgaccgagt--taactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatac 165  Q
    |||||||||||| |||||||  |||||| |||||||||||| |||| ||| ||||||| | |||| | || ||||||| || ||||||||||| |  |||    
T  10294977 tcggtcgagttt-accgagtgttaactc-agtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacacgattgttgtac 10295074  T
Q  166 ctagctaaaaacgtaaactcgataaactttacgagttaacactcgattt 214  Q
        ||||||||||||||||| ||| ||    |||||||||||||||||    
T  10295075 ----ctaaaaacgtaaactcggtaatctcggagagttaacactcgattt 10295119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 7665692 - 7665553
Alignment:
Q  81 accgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgta 180  Q
    ||||||||||||| |||||||||||||||| |||| ||||||| |  ||||| || |||||||||| ||||||||||||||     ||||||||||||||    
T  7665692 accgagttaactctagtcaaactcgtcaaatattccgattttaccaaaaatcgagtttacctccgagttaacacgattttg----gtagctaaaaacgta 7665597  T
Q  181 aactcgataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    |||| | |||| |   ||||||||||||||||||||| ||||||    
T  7665596 aactaggtaaattcggcgagttaacactcgatttgtggaacatt 7665553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 45602409 - 45602556
Alignment:
Q  73 cgagtttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagcta 172  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||| | |||||  || |||||| ||| || |||| ||||| ||||    | |    
T  45602409 cgagtttgaccgagttaactcgagtcaaactcgtcaaacatttcgattttaccagaaattgagtttacctacgagttgacacaattttaatac----cca 45602504  T
Q  173 aaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    |||||||||| ||| ||||||   ||||||||||||||||| ||| ||||||    
T  45602505 aaaacgtaaattcggtaaactcggcgagttaacactcgattcgtgaaacatt 45602556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 25049977 - 25049871
Alignment:
Q  76 gtttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaa 175  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||   |||||| || |||||||||| || ||||||||||| |||    ||||||    
T  25049977 gtttgaccgagttaactcgagtcaaactcatcaaacattccgattttactagaaatcgagtttacctccgagttgacacgattttggtac----ctaaaa 25049882  T
Q  176 acgtaaactcg 186  Q
    |||||||||||    
T  25049881 acgtaaactcg 25049871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 4962737 - 4962870
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||  |||||||  ||||||| || |||||||| | ||||||||||||||||||    ||||||||||||||||    
T  4962737 gttaactcg-gtcaaactcgtcaaacctttcgattttacttgaaatcgagtttacctccaagttaacacgattttgatac----ctaaaaacgtaaactc 4962831  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    |||||||||   |||||||| ||| ||||| | ||||||    
T  4962832 gataaacttagagagttaacgctcaatttgcggaacatt 4962870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 21386499 - 21386623
Alignment:
Q  96 gtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaacttt 195  Q
    |||||||||||||||| ||  ||||||| | |||||| || |||||||  | ||||||||||||||||||    ||||||| ||||||||| ||||||      
T  21386499 gtcaaactcgtcaaacttttcgattttaccagaaatcgagtttacctctaagttaacacgattttgatac----ctaaaaatgtaaactcggtaaactcg 21386594  T
Q  196 acgagttaacactcgatttgtgtaacatt 224  Q
      |||||||||||||||||| | ||||||    
T  21386595 gagagttaacactcgatttggggaacatt 21386623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 33693351 - 33693277
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttg 161  Q
    ||||||||| |||||||||||||||| ||||||||||| | |||||| || |||||||| | ||||||||||||||    
T  33693351 gttaactcg-gtcaaactcgtcaaaccttctgattttaccagaaatcgagtttacctccaagttaacacgattttg 33693277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 8598754 - 8598621
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| || |||||||||| |||||||| ||||   ||    ||||| ||||||||||    
T  8598754 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcac----ctaaacacgtaaactc 8598660  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||||||   |||||| |||| ||||||||| ||||||    
T  8598659 ggtaaactcgccgagttgacacgcgatttgtggaacatt 8598621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 225
Target Start/End: Complemental strand, 43173010 - 43172888
Alignment:
Q  99 aaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaactttacg 198  Q
    |||||| |||||| ||  ||||||| | |||||| || |||||||||| | |||||||||||| ||||||    || || |||||||||||||||| | |    
T  43173010 aaactcttcaaacctttcgattttaccagaaatcgagtttacctccgagtcaacacgattttggtaccta----aacacataaactcgataaacttaaag 43172915  T
Q  199 agttaacactcgatttgtgtaacatta 225  Q
    |||||||| |||||||| | |||||||    
T  43172914 agttaacattcgatttgcggaacatta 43172888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 9818579 - 9818701
Alignment:
Q  96 gtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaacttt 195  Q
    |||||||||||||||| ||| ||||| | |  ||||| || |||||||||| |||||||| |||||    | | |||||||||||||||||    | |||    
T  9818579 gtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttg----ccacctaaaaacgtaaactcgggcgagttt 9818674  T
Q  196 acgagttaacactcgatttgtgtaaca 222  Q
    ||| |||||||||||||||||| ||||    
T  9818675 acgtgttaacactcgatttgtggaaca 9818701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 48379692 - 48379559
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| |||||||||||| || | ||| ||||||| | |||||| || ||||||| || |||||||||||||  |||    ||||||||||||||||    
T  48379692 gttaactc-agtcaaactcgttaagccttccgattttaccagaaatcgagtttacctcagaattaacacgatttttgtac----ctaaaaacgtaaactc 48379598  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||| ||    |||||||||||||||||| | ||||||    
T  48379597 ggtaatctcggagagttaacactcgatttgcggaacatt 48379559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 49296211 - 49296078
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||  ||||||| | |||||| || |||||||||| |||||||| ||||   ||    ||||| ||||||||||    
T  49296211 gttaactcg-gtcaaactcgtcaaacttttcgattttaccagaaatcgagtttacctccgagttaacacgtttttagcac----ctaaacacgtaaactc 49296117  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||||||   |||||| |||| ||||||||| ||||||    
T  49296116 ggtaaactcgccgagttgacacgcgatttgtggaacatt 49296078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 20833439 - 20833315
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| |||||||||||| |||| ||| ||||||| | ||||   || ||||||| || |||||||||||||  |||    ||||||||||||||||    
T  20833439 gttaactc-agtcaaactcgttaaaccttccgattttaccagaaactgagtttacctcagagttaacacgatttttgtac----ctaaaaacgtaaactc 20833345  T
Q  186 gataaactttacgagttaacactcgatttg 215  Q
    ||||| ||    ||||||||||||||||||    
T  20833344 gataatctcagagagttaacactcgatttg 20833315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 30238581 - 30238633
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    |||||||||||||||||||| |  ||||| |||||||||||||||||| ||||    
T  30238581 ctaaaaacgtaaactcgatagagattacgcgttaacactcgatttgtggaaca 30238633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 39038624 - 39038499
Alignment:
Q  95 agtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaactt 194  Q
    |||||||||||| |||| ||| ||||||| | |||| | || ||||||| || ||||||| |||||  |||    ||||||||||||| ||||||| ||     
T  39038624 agtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacaccatttttgtac----ctaaaaacgtaaattcgataatctc 39038529  T
Q  195 tacgagttaacactcgatttgtgtaacatt 224  Q
       |||||||||||||||||||| ||||||    
T  39038528 agagagttaacactcgatttgtggaacatt 39038499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 49458444 - 49458372
Alignment:
Q  96 gtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    |||||||||||||||| ||| ||||||| | |||||| || |||| || || ||||||| |||||||||||||    
T  49458444 gtcaaactcgtcaaaccttccgattttaccagaaatcgagtttacttcagagttaacacaattttgataccta 49458372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 52617638 - 52617763
Alignment:
Q  95 agtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaactt 194  Q
    |||||||||||| |||| ||| ||||||| | |||| | || ||||||| || |||||||||||||  |||    ||||||||||||| ||||||| ||     
T  52617638 agtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacacgatttttgtac----ctaaaaacgtaaattcgataatctc 52617733  T
Q  195 tacgagttaacactcgatttgtgtaacatt 224  Q
       |||||||||||||||||| | ||||||    
T  52617734 agagagttaacactcgatttgcggaacatt 52617763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 53836057 - 53835984
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgatttt 160  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| || |||||||| | |||||||| ||||    
T  53836057 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcaagtttacctccaagttaacacgttttt 53835984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 51737345 - 51737478
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| |||||||||||| |||| ||| |||||||   |||| | || ||||||| || |||||||||||||  |||    ||||||| ||||||||    
T  51737345 gttaactc-agtcaaactcgttaaaccttccgattttactagaaaccgagtttacctcagagttaacacgatttttgtac----ctaaaaatgtaaactc 51737439  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    ||||| ||    |||||||||||||||||| | ||||||    
T  51737440 gataatctcagagagttaacactcgatttgcggaacatt 51737478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 50761758 - 50761882
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| |||||||||||| |||| |||  |||| | | ||||||||  ||||||| || |||||||||||||  |||    ||||||||||||||||    
T  50761758 gttaactc-agtcaaactcgttaaaccttccaatttcaccagaaatctattttacctcagagttaacacgatttttgtac----ctaaaaacgtaaactc 50761852  T
Q  186 gataaactttacgagttaacactcgatttg 215  Q
    | ||| ||    ||||||||||||||||||    
T  50761853 ggtaatctcggagagttaacactcgatttg 50761882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 49971586 - 49971734
Alignment:
Q  73 cgagtttgaccgagttaactcgagtcaaactcgtcaa-acattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagct 171  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||||| | |||| | || |||||||||| || ||||||||||| |||    ||    
T  49971586 cgagtttgaccgagttaactcgagtcaaactcgtcaacacatttcgattttaccagaaaacgagtttacctccgagttgacacgattttggtac----ct 49971681  T
Q  172 aaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    ||||||||||||||| ||||||     |||||||| |||||||||| ||||||    
T  49971682 aaaaacgtaaactcggtaaactcagtaagttaacattcgatttgtggaacatt 49971734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 52182457 - 52182311
Alignment:
Q  72 tcgagtttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagct 171  Q
    ||||||||  || |||||||||||||| |||||||||||||||  ||||||| | |||||| |  |||||||||| || |||||||||   ||||||       
T  52182457 tcgagtttaccctagttaactcgagtcgaactcgtcaaacatttcgattttaccagaaatcgaatttacctccgaattgacacgatttcagtaccta--- 52182361  T
Q  172 aaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
     |||||||||||||||||||||   ||||||||||||||||||||| ||||    
T  52182360 -aaaacgtaaactcgataaactcggcgagttaacactcgatttgtgaaaca 52182311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 27257849 - 27257986
Alignment:
Q  73 cgagtttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagcta 172  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |  ||||| || ||||||| || || ||||||||||| |||    |||    
T  27257849 cgagtttgaccgaattaactctagtcaaactcgtcaaacattccgattttaccgaaaatcaagtttacctcggagttgacacgattttggtac----cta 27257944  T
Q  173 aaaacgtaaactcgataaactttacgagttaacactcgattt 214  Q
    |||||||||| ||  ||||||   |||||||||||| |||||    
T  27257945 aaaacgtaaattcattaaactcggcgagttaacactagattt 27257986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 9192140 - 9192007
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||||||||||| | |||||| || |||||||||| |||||||| ||||   ||    ||||| ||||||||||    
T  9192140 gttaactcg-gtcaaactcgtcaaactttctgattttaccagaaatcgagtttacctccgagttaacacgtttttagcac----ctaaacacgtaaactc 9192046  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||||||   |||||| |||| ||||||||| ||||||    
T  9192045 ggtaaactcgccgagttgacacgcgatttgtggaacatt 9192007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 47371580 - 47371713
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||| ||||| ||| ||||||| | |||||| || |||||||||| |||||||||||||| ||||||  ||    |||||||||    
T  47371580 gttaactcg-gtcaaactcggcaaaccttccgattttaccagaaatcgagtttacctccgagttaacacgattttggtacctaagta----cgtaaactc 47371674  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    ||||||||    | |||||||||||||||| | ||||||    
T  47371675 gataaactcagagtgttaacactcgatttgcgaaacatt 47371713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 5209373 - 5209454
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    |||||||||| ||||||||||||||| ||||||||| | | |||||| || | |||||||| |||||||||||||| ||||||    
T  5209373 gttaactcga-tcaaactcgtcaaactttctgatttcaccagaaatcgagttgacctccgagttaacacgattttggtaccta 5209454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 4005183 - 4005050
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| || |||||||||| |||||||| ||||   ||    ||||| ||||||||||    
T  4005183 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcac----ctaaacacgtaaactc 4005089  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||||||   |||||| |||| ||||||||| ||||||    
T  4005088 ggtaaactcgccgagttgacacgcgatttgtggaacatt 4005050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 5494753 - 5494886
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| |||||||||| |||||| ||||||||||| | |||| | || ||||||| || |||||||||||||| |||    ||||||||||||||||    
T  5494753 gttaactc-agtcaaactcatcaaaccttctgattttaccagaaaccgagtttacctcagagttaacacgattttggtac----ctaaaaacgtaaactc 5494847  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||| ||    |||||||||||| ||||| | ||||||    
T  5494848 ggtaatctcggagagttaacactcaatttgcggaacatt 5494886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 45273110 - 45272977
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| ||||||||||||||||| ||| ||||||| | |||| | || ||||||| || ||||||| |||||  |||    ||||||||||||||||    
T  45273110 gttaactc-agtcaaactcgtcaaaccttccgattttaccagaaaccgagtttacctcagagttaacacaatttttgtac----ctaaaaacgtaaactc 45273016  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    ||||| ||    |||||||||||||||||| | ||||||    
T  45273015 gataatctcggagagttaacactcgatttgcggaacatt 45272977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 1243311 - 1243384
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgatttt 160  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| || |||||||||| |||||||| ||||    
T  1243311 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgttttt 1243384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 35177215 - 35177296
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    ||||||||| |||||||||||||| | ||| ||||||| | |||||| || ||||||| || |||||||||||||| ||||||    
T  35177215 gttaactcg-gtcaaactcgtcaatccttccgattttatcagaaatcgagtttacctctgaattaacacgattttggtaccta 35177296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 41353537 - 41353464
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgatttt 160  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| || |||||||||| |||||||| ||||    
T  41353537 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgttttt 41353464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 8140888 - 8141021
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||| |||||||||| | |||| |||| |||||| | |||||| |  ||||||| || |||||||||||||  |||    ||||||||||||||||    
T  8140888 gttaactc-agtcaaactcattaaaccttctaattttaccagaaatcgattttacctcagagttaacacgatttttgtac----ctaaaaacgtaaactc 8140982  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    ||||| ||    |||||||||||||||||| | ||||||    
T  8140983 gataatctcggagagttaacactcgatttgcggaacatt 8141021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 51107008 - 51106875
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| || || ||||||| |||||||| ||||   ||    ||||| ||||||||||    
T  51107008 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagttttcctccgagttaacacgtttttagcac----ctaaacacgtaaactc 51106914  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||||||   |||||| |||| ||||||||| ||||||    
T  51106913 ggtaaactcgccgagttgacacgcgatttgtggaacatt 51106875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 48966497 - 48966629
Alignment:
Q  87 ttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcg 186  Q
    |||||||| |||||||||||||||| |||  |||| | | |||||| || ||||||| || |||||||||||||| |||    ||||| ||||||||||     
T  48966497 ttaactcg-gtcaaactcgtcaaaccttccaatttcatcagaaatcaagtttacctcagagttaacacgattttggtac----ctaaacacgtaaactca 48966591  T
Q  187 ataaactttacgagttaacactcgatttgtgtaacatt 224  Q
     ||||||  | |||||||| ||||||||| | ||||||    
T  48966592 gtaaactcgaagagttaaccctcgatttgcggaacatt 48966629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 11579105 - 11579178
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgatttt 160  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| |  |||||||||| |||||||| ||||    
T  11579105 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcaaatttacctccgagttaacacgttttt 11579178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 37980038 - 37980092
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    ||||||||||||| |||   || |||||||||||||||||||||||| |||||||    
T  37980038 ctaaaaacgtaaattcgtccaaatttacgagttaacactcgatttgtataacatt 37980092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 3593350 - 3593281
Alignment:
Q  99 aaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    ||||| ||||||| ||| |||||||   |||||| |  |||||||||| |||||||||||||||||||||    
T  3593350 aaacttgtcaaaccttccgattttattagaaatcgaatttacctccgagttaacacgattttgataccta 3593281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 18954502 - 18954450
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    |||||||||||||||||    | ||||||||||||||||||||||||| ||||    
T  18954502 ctaaaaacgtaaactcgggcgaatttacgagttaacactcgatttgtggaaca 18954450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 15926483 - 15926394
Alignment:
Q  77 tttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacc 166  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| | |||||| || | |||||||| || ||||||||||| ||||    
T  15926483 tttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctccgagttgacacgattttggtacc 15926394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 32294011 - 32293928
Alignment:
Q  83 cgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacc 166  Q
    ||||||||||||||||||||||||||||||||| |||||||   |||||| || |||| || ||||||||||||||||| ||||    
T  32294011 cgagttaactcgagtcaaactcgtcaaacattccgattttacaagaaatccagtttacatcagatttaacacgattttggtacc 32293928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 32242208 - 32242286
Alignment:
Q  83 cgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttg 161  Q
    |||||||||||||||||||||||| ||||||||||||||||   |||||| || ||||||| || ||||||||||||||    
T  32242208 cgagttaactcgagtcaaactcgttaaacattctgattttacaagaaatcaagtttacctcagagttaacacgattttg 32242286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 1833697 - 1833808
Alignment:
Q  72 tcgagtttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagct 171  Q
    ||||||||||| || |||||||||||||||||||  ||||||||| |||||| | |||||| |  |||||||| | || ||||||||||| |||    ||    
T  1833697 tcgagtttgactgaattaactcgagtcaaactcgataaacattcttattttaccagaaatcgaatttacctccaaattgacacgattttgttac----ct 1833792  T
Q  172 aaaaacgtaaactcga 187  Q
    ||||||||||||||||    
T  1833793 aaaaacgtaaactcga 1833808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 3858418 - 3858464
Alignment:
Q  77 tttgaccgagttaactcgagtcaaactcgtcaaacattctgatttta 123  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||    
T  3858418 tttgaccgagttaactcgagttaaactcgtcaaacattccgatttta 3858464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 31847237 - 31847358
Alignment:
Q  100 aactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgt-aaactcgataaactttacg 198  Q
    |||||||||||| ||||||||||| | |||||  || |||||||||| ||| || |||||| ||||    |||||||||| ||||||||||||||    |    
T  31847237 aactcgtcaaaccttctgattttatcagaaatagagtttacctccgagttaccatgattttaatac----ctaaaaacgtaaaactcgataaactcggag 31847332  T
Q  199 agttaacactcgatttgtgtaacatt 224  Q
    ||||||||||||||||| | ||||||    
T  31847333 agttaacactcgatttgaggaacatt 31847358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 38295724 - 38295805
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    ||||||||| |||||||||||||||| ||||||||||| | |||| | |  || ||||||| ||||||| |||||||||||||    
T  38295724 gttaactcg-gtcaaactcgtcaaaccttctgattttaccagaaaccaaattttcctccgaattaacacaattttgataccta 38295805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 18899934 - 18900067
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||| |||||||   |||||| || |||||||||| |||||||| ||||   ||    ||||| ||||||||||    
T  18899934 gttaactcg-gtcaaactcgtcaaactttccgattttactagaaatcgagtttacctccgagttaacacgtttttagcac----ctaaacacgtaaactc 18900028  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||||||   |||||| |||| ||||||||| ||||||    
T  18900029 ggtaaactcgccgagttgacacgcgatttgtggaacatt 18900067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 40829731 - 40829650
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    ||||||||| |||||| ||||||||| ||   |||||| | |||| | || |||||||||| |||||||||||||||||||||    
T  40829731 gttaactcg-gtcaaattcgtcaaacctttctattttaccagaaaccgagtttacctccgagttaacacgattttgataccta 40829650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 37810898 - 37810963
Alignment:
Q  96 gtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttg 161  Q
    ||||||||| ||||||||| |||||| | |  ||||| || ||||||||||||||||||| |||||    
T  37810898 gtcaaactcatcaaacattatgatttcaccaaaaatcaagtttacctccgatttaacacgtttttg 37810963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 15224316 - 15224244
Alignment:
Q  96 gtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    |||||||||||||||| ||  ||||| | | |||||| || ||||||| || |||||||||||||| ||||||    
T  15224316 gtcaaactcgtcaaacttttcgatttcaccagaaatcgagtttacctctgagttaacacgattttggtaccta 15224244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 18727653 - 18727732
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacc 166  Q
    ||||||||| || ||||||||||||| || |||||||| | ||| || || |||||||||| |||||||| ||||| ||||    
T  18727653 gttaactcg-gtgaaactcgtcaaactttttgattttaccagaattcgagtttacctccgagttaacacggttttggtacc 18727732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 165
Target Start/End: Complemental strand, 13461492 - 13461390
Alignment:
Q  62 ataaactcggtcgagtttgaccgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttg 161  Q
    |||||||||||||||||| || |||||    ||||||||||||||||||||||||||||||| |  ||| | || |||||||||| || |||||||||||    
T  13461492 ataaactcggtcgagttt-actgagtttgaccgagtcaaactcgtcaaacattctgattttaccaaaaaccgagtttacctccgagttgacacgattttg 13461394  T
Q  162 atac 165  Q
    ||||    
T  13461393 atac 13461390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 16438789 - 16438668
Alignment:
Q  99 aaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactcgataaactttacg 198  Q
    ||||||||||||| ||| ||||||| | ||| || || |||||||| | |||||||||||||  |||    ||||||||||||||||||||||||    |    
T  16438789 aaactcgtcaaaccttccgattttaccagaagtcgagtttacctccaagttaacacgatttttgtac----ctaaaaacgtaaactcgataaactcggag 16438694  T
Q  199 agttaacactcgatttgtgtaacatt 224  Q
    ||||||||||||||||| | ||||||    
T  16438693 agttaacactcgatttgcggaacatt 16438668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 1463676 - 1463809
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| || |||||||||| |||||||| ||||   ||    ||||| ||||||||||    
T  1463676 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcac----ctaaacacgtaaactc 1463770  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||||||   |||||| |||| ||||||||| ||||||    
T  1463771 ggtaaactcgccgagttgacacgcgatttgtggaacatt 1463809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 6788195 - 6788062
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||| ||||||| | |||||| || |||||||||| |||||||| ||||   ||    ||||| ||||||||||    
T  6788195 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcac----ctaaacacgtaaactc 6788101  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||||||   |||||| |||| ||||||||| ||||||    
T  6788100 ggtaaactcgccgagttgacacgcgatttgtggaacatt 6788062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 31975633 - 31975738
Alignment:
Q  63 taaactcggtcgagtttgaccgagt--taactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgatttt 160  Q
    ||||||| ||||||||| |||||||  ||||||| |||||||||||||||| ||| |||||||   |||||| || ||||||| || |||||||||||||    
T  31975633 taaactcagtcgagttt-accgagtcttaactcg-gtcaaactcgtcaaaccttccgattttacaagaaatcgagtttacctcagagttaacacgatttt 31975730  T
Q  161 gataccta 168  Q
    | ||||||    
T  31975731 ggtaccta 31975738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 8779583 - 8779717
Alignment:
Q  83 cgagttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaa 182  Q
    |||||||||| | |||||||||||||||| ||| ||||| | |  ||| | || |||||||||| |||||||| |||||    | | |||||||||||||    
T  8779583 cgagttaacttg-gtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagttaacacgtttttg----ccacctaaaaacgtaaa 8779677  T
Q  183 ctcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    ||||    | ||||||||||||||||||||||||| ||||    
T  8779678 ctcggacgagtttacgagttaacactcgatttgtgaaaca 8779717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 31996253 - 31996379
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| |||||||||||||||| ||| ||||| | |  ||||| || |||||||||| |||||||| |||||    | | ||||||||||||||||    
T  31996253 gttaactcg-gtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttg----ccacctaaaaacgtaaactc 31996347  T
Q  186 gataaactttacgagttaacactcgatttgtg 217  Q
    ||   | ||| || ||||||||||||||||||    
T  31996348 gagcgagtttgcgtgttaacactcgatttgtg 31996379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 2606990 - 2606857
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| ||||||||| |||||| ||||||||||| | |||||| || ||||||| || |||| ||||||||| | |    ||||| ||||||||||    
T  2606990 gttaactcg-gtcaaactcatcaaaccttctgattttaccagaaatcgagtttacctcagagttaaaacgattttggtgc----ctaaacacgtaaactc 2606896  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
      ||||||  | ||||||||| |||||||| | ||||||    
T  2606895 agtaaactcaaagagttaacattcgatttgcggaacatt 2606857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 3000335 - 3000202
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||||| ||||||||||||||| | | ||||||| |  ||||| |  ||||| |||| |||||||||||||| ||||||    || ||||||| ||    
T  3000335 gttaactcga-tcaaactcgtcaaacttcccgattttaccataaatcgaatttacccccgagttaacacgattttggtaccta----aacacgtaaaatc 3000241  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
      ||||||   |||||||||||| |||||||| ||||||    
T  3000240 agtaaactcggcgagttaacacttgatttgtggaacatt 3000202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 31535074 - 31535146
Alignment:
Q  96 gtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgataccta 168  Q
    |||||||||||||||| ||  ||||||| | |||||| || || |||| || ||||||| |||||||||||||    
T  31535074 gtcaaactcgtcaaacctttcgattttaccagaaatcgagtttgcctcagagttaacacaattttgataccta 31535146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1128 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 910 - 1043
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    ||||||||| ||||||||| |||||| ||| ||||||| | |||| | || |||||||||| |||||||||||||| |||    ||||| ||||||||||    
T  910 gttaactcg-gtcaaactcatcaaactttccgattttaccagaaaccgagtttacctccgagttaacacgattttggtac----ctaaacacgtaaactc 1004  T
Q  186 gataaactttacgagttaacactcgatttgtgtaacatt 224  Q
    | ||||||    | |||||||||||||||| | ||||||    
T  1005 ggtaaactcagagtgttaacactcgatttgcggaacatt 1043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 89375 - 89252
Alignment:
Q  86 gttaactcgagtcaaactcgtcaaacattctgattttagctgaaatctaggttacctccgatttaacacgattttgatacctagctaaaaacgtaaactc 185  Q
    |||||||||| ||||||||||||||| |||  |||||| | |||||| || |||||| | | |||||||||| ||| |||    |||||||| |||||||    
T  89375 gttaactcga-tcaaactcgtcaaaccttccaattttaccagaaatcgagtttaccttcaagttaacacgatattggtac----ctaaaaacttaaactc 89281  T
Q  186 gataaactttacgagttaacactcgattt 214  Q
    ||||||||    |||||||||||||||||    
T  89280 gataaactcacagagttaacactcgattt 89252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 1383 - 1331
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    ||||||||||||||||| |  | ||||||||||||||||||||||||| ||||    
T  1383 ctaaaaacgtaaactcggtcgagtttacgagttaacactcgatttgtgaaaca 1331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 25685 - 25736
Alignment:
Q  170 ctaaaaacgtaaactcgataaactttacgagttaacactcgatttgtgtaaca 222  Q
    |||||||||||||||| | | | ||||||||||||||||||||||||| ||||    
T  25685 ctaaaaacgtaaactc-agagagtttacgagttaacactcgatttgtggaaca 25736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University