View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_49 (Length: 230)
Name: NF18421_high_49
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 30888744 - 30888542
Alignment:
| Q |
13 |
agcagagaaataattgatgtggtcgggtccatggtaaaacgatgcgtaactaactcatcactttgagtcnnnnnnnctcatcacaatcaagattatattt |
112 |
Q |
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| T |
30888744 |
agcagagaaataattgatgtggtcgggtccatggtaaaacgatgcgtaactaactcatcactttgagtcaaaaaaactcatcacaatcaagattatattt |
30888645 |
T |
|
| Q |
113 |
atgaagttatgaacgaagaattcgtgagaagctagaaccgttggatgtttattcacaatcattggacatgagatcttgtggcaaagaagaggtgatgttt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30888644 |
atgaagttatgaacgaagaattcgtgagaagctagaaccgttggatgtttattcacaatcattggacatgaaatcttgtggcaaagaagaggtgatgttt |
30888545 |
T |
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| Q |
213 |
tat |
215 |
Q |
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||| |
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| T |
30888544 |
tat |
30888542 |
T |
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