View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18421_high_5 (Length: 533)
Name: NF18421_high_5
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_5 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 11389914 - 11390439
Alignment:
| Q |
1 |
tcgaagttgatgcgacactctacagtaagtgatatgtagtcctcttcagatgaattcactgttgttttcagcagttcttgcagaaaattgatgcaacaca |
100 |
Q |
| |
|
||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11389914 |
tcgaagttgatgcaaccctcttcagtaactgatatgtagtcctcttcagatgaattcactgttgttttcagcagttcttgcagaaaattgatgcaacaca |
11390013 |
T |
|
| Q |
101 |
tactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgctgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11390014 |
tactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgcctg |
11390113 |
T |
|
| Q |
201 |
cttaatttctacctaacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttaga |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11390114 |
cttaatttctacctgacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttaga |
11390213 |
T |
|
| Q |
301 |
tctacttccttatgaaaatcaaggtattgtggttccttctctggtttctccacaaaggatgttttcactctcacctttttgaacagtgaaatcaagtgct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11390214 |
tctacttccttatgaaaatcaaggtattctggttccttctgtagtttctccacaaaggatgttttcactttcacctttttgaacagtgaaatcaagtgct |
11390313 |
T |
|
| Q |
401 |
cccagttctgttcttcaatttcctcgttagttgccatcacttgaagagcttagatggcctgtcaatattactactatttatttcctaaattcactatatt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11390314 |
cccagttctgttcttcaatttcctcgttagttgccatcacttgaagagcttagatggcttgtcaatattactactatttatttcctaaatgcactatatt |
11390413 |
T |
|
| Q |
501 |
actactattgttattaccctatgcta |
526 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
11390414 |
actactattgttattaccctatgcta |
11390439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 11406575 - 11407100
Alignment:
| Q |
1 |
tcgaagttgatgcgacactctacagtaagtgatatgtagtcctcttcagatgaattcactgttgttttcagcagttcttgcagaaaattgatgcaacaca |
100 |
Q |
| |
|
||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11406575 |
tcgaagttgatgcaaccctcttcagtaactgatatgtagtcctcttcagatgaattcactgttgttttcagcagttcttgcagaaaattgatgcaacaca |
11406674 |
T |
|
| Q |
101 |
tactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgctgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11406675 |
tactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgcctg |
11406774 |
T |
|
| Q |
201 |
cttaatttctacctaacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttaga |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11406775 |
cttaatttctacctgacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttaga |
11406874 |
T |
|
| Q |
301 |
tctacttccttatgaaaatcaaggtattgtggttccttctctggtttctccacaaaggatgttttcactctcacctttttgaacagtgaaatcaagtgct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11406875 |
tctacttccttatgaaaatcaaggtattctggttccttctgtagtttctccacaaaggatgttttcactttcacctttttgaacagtgaaatcaagtgct |
11406974 |
T |
|
| Q |
401 |
cccagttctgttcttcaatttcctcgttagttgccatcacttgaagagcttagatggcctgtcaatattactactatttatttcctaaattcactatatt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11406975 |
cccagttctgttcttcaatttcctcgttagttgccatcacttgaagagcttagatggcttgtcaatattactactatttatttcctaaatgcactatatt |
11407074 |
T |
|
| Q |
501 |
actactattgttattaccctatgcta |
526 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
11407075 |
actactattgttattaccctatgcta |
11407100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 24253593 - 24253157
Alignment:
| Q |
1 |
tcgaagttgatgcgacactctacagtaagtgatatgtagtcctcttcagatgaattcactgttgttttcagcagttcttgcagaaaattgatgcaacaca |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| || |||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
24253593 |
tcgaagttgatgcgacactcttcagtaagtgttatgtagtcctcctcagatgaatccattgttgttttcagcaattcttgcagaaaattgatgcagcacg |
24253494 |
T |
|
| Q |
101 |
tactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgctgg |
200 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||||| ||| ||||||||||||||||| ||||||||||| | ||| |||||||||||||||||| | |
|
|
| T |
24253493 |
gactttgcttcgccatttcctcttttggcatatgaacttggtacttttcgaggatctggtgaagctccttgaattcttcagctacttctttctttgcttg |
24253394 |
T |
|
| Q |
201 |
cttaatttctacctaacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttaga |
300 |
Q |
| |
|
|||| ||| | ||| || |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| | ||| |||||| ||| || || |
|
|
| T |
24253393 |
cttagtttgtgcctgacgagtgtcttcccctacttcaatagcgttgatatgctcttattttccagttggttttggctcctgcggctcctgccgcttacga |
24253294 |
T |
|
| Q |
301 |
tctacttccttatgaaaatcaaggtattgtggttccttctctggtttctccacaaaggatgttttcactctcacctttttgaacagtgaaatcaagtgct |
400 |
Q |
| |
|
|||| |||||| ||||| || |||||| ||||||| |||| |||| ||||||||||||||| |||| ||||||| ||||| ||||| |||||||||| |
|
|
| T |
24253293 |
tctatttccttctgaaactcgaggtatcctggttccatctcctgtttatccacaaaggatgttgtcaccttcaccttcttgaatagtgatatcaagtgct |
24253194 |
T |
|
| Q |
401 |
cccagttctgttcttcaatttcctcgttagttgccat |
437 |
Q |
| |
|
|||| | ||||||| || ||||||| || |||||||| |
|
|
| T |
24253193 |
cccattcctgttctccagtttcctcttttgttgccat |
24253157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 22567454 - 22567012
Alignment:
| Q |
1 |
tcgaagttgatgcgacactctacagtaagtgatatgtagtcctcttcagatgaattcactgttgttttcagcagttcttgcagaaaattgatgcaacaca |
100 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||||| ||||||||| ||||||||| | || ||||||||| ||||||| ||||| |||||| || |
|
|
| T |
22567454 |
tcgaagttaatgtgacactcttcagtaagtgatacgtagtcctccgcagatgaatcaattgctgttttcagtagttcttatagaaagttgatgttgcatg |
22567355 |
T |
|
| Q |
101 |
tactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgctgg |
200 |
Q |
| |
|
|||||||||| |||||||| |||| |||| ||||| ||||||||||||||||||||| ||||||||||| | || ||| |||||||||||| |
|
|
| T |
22567354 |
gactttgcttcatcatttcctttactgtgatatgaacttggtatttttcgaggatctggtgaagctccttgaactcgtcatctaattctttctttgccta |
22567255 |
T |
|
| Q |
201 |
cttaatttctacctaacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttaga |
300 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||| |||||||||| | | || ||| |
|
|
| T |
22567254 |
cttaatttctgcctggcgagtgtcttcccctacttcaatagcattgatctgctcatcttttccagttggttttgatttctgcagctcctgctgcttgaga |
22567155 |
T |
|
| Q |
301 |
tctacttccttatgaaaatcaaggtattgtggttccttctctggtttctccacaaaggatgttttcactctcacctttttgaacagtgaaatcaagtgct |
400 |
Q |
| |
|
||||||||||| ||||| || |||||| ||||||||||||| ||||||||||||| |||||| |||| ||||||| ||||| | ||| |||||||||| |
|
|
| T |
22567154 |
tctacttccttctgaaactcgaggtatcttggttccttctctagtttctccacaaatgatgttgtcaccgtcaccttcttgaataatgagatcaagtgct |
22567055 |
T |
|
| Q |
401 |
cccagttctgttcttcaatttcctcgttagttgccatcacttg |
443 |
Q |
| |
|
| ||||| ||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
22567054 |
ctcagttttgttcctcagtttcctctttagttgccatcacttg |
22567012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 3398682 - 3398636
Alignment:
| Q |
391 |
atcaagtgctcccagttctgttcttcaatttcctcgttagttgccat |
437 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| |||||| |||| |
|
|
| T |
3398682 |
atcaagtgctcctagttctgttcttccatttcctctttagtttccat |
3398636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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