View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_50 (Length: 229)
Name: NF18421_high_50
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 38990990 - 38991188
Alignment:
| Q |
13 |
cagagaggaaaatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgt |
112 |
Q |
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| T |
38990990 |
cagagaggaaaatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgt |
38991089 |
T |
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| Q |
113 |
catttggacaggtccttcaatagtgagtggtggggtatgggataacgagttgtgaatggtgatgtcagagacaataccagaacctctcagcactgtgat |
211 |
Q |
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| T |
38991090 |
catttggacaggtccttcaatagtgagtggtggggtatgagataacgagctgtgaatggtgatgtcagagacaataccaaaacctctcagcactgtgat |
38991188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 38954785 - 38954597
Alignment:
| Q |
13 |
cagagaggaaaatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgt |
112 |
Q |
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|||| ||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||| | |
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| T |
38954785 |
cagataggaaaatgctaaaagaagaatggttagggttggtgatgaattcagaaggaacagtatcagaattgggattgatgtaagtgccagagagagacat |
38954686 |
T |
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| Q |
113 |
catttggacaggtccttcaatagtgagtggtggggtatgggataacgagttgtgaatggtgatgtcagagacaataccagaacctctca |
201 |
Q |
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| T |
38954685 |
cattttgatgggtccttcaatagttagtgcaggggaatgagatgtcgagttacggatggtaatattagagacaagaccggaacctctca |
38954597 |
T |
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