View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18421_high_51 (Length: 225)
Name: NF18421_high_51
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_51 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 29769841 - 29769650
Alignment:
| Q |
20 |
tttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatcccggtcatcgtc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29769841 |
tttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatcccggtcatcgtc |
29769742 |
T |
|
| Q |
120 |
ccaccggtcgcttctccaatggtgtcaacctccctgaccttatcggtaagtaacatcaacttcatctttagttagttcttctagagtataat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29769741 |
ccaccggtcgcttctccaatggtgtcaacctccctgaccttatcggtaagtaacatcaacttcatctttagttagttcttctagagtataat |
29769650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 48100348 - 48100437
Alignment:
| Q |
19 |
atttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatcc |
108 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||| |||| || || | || || |||||||||||||| || |||||||| |
|
|
| T |
48100348 |
atttggtgattcacttgttgacagtggcaacaacaattatttggtaactactgctagggctgattctcctccttatggaattgattatcc |
48100437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 48074385 - 48074528
Alignment:
| Q |
20 |
tttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatcccggtcatcgtc |
119 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| || || |||||| || ||||| || ||| ||||||||||| |||||||| ||| ||| |
|
|
| T |
48074385 |
tttggtgattcacttgttgacaatggcaacaataactacttagcaaccactgctcgtgctgattcttacccttatggcattgattatccaactcaccgtg |
48074484 |
T |
|
| Q |
120 |
ccaccggtcgcttctccaatggtgtcaacctccctgaccttatc |
163 |
Q |
| |
|
|||| || |||||||||||||| ||||| | |||||||||||| |
|
|
| T |
48074485 |
ccactggacgcttctccaatggcctcaacatgcctgaccttatc |
48074528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 1807246 - 1807335
Alignment:
| Q |
19 |
atttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgattatcc |
108 |
Q |
| |
|
|||||| || ||||||||||| | ||| || || ||||||||||| || || || ||||| || |||||||||||||| || |||||||| |
|
|
| T |
1807246 |
atttggagattcacttgttgataatggaaataacaattatttgcttacaactgctcgtgctgattctcctccttatggaattgattatcc |
1807335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University