View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_high_6 (Length: 520)
Name: NF18421_high_6
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_high_6 |
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| [»] scaffold0374 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Original strand, 42874946 - 42875438
Alignment:
| Q |
11 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttagtgagaccaagtttcaatccttcttccatggattcccaaacacc |
110 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42874946 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42875045 |
T |
|
| Q |
111 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaatacaagtccaaatag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
42875046 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtag |
42875145 |
T |
|
| Q |
211 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875146 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
42875245 |
T |
|
| Q |
311 |
gaaccaaaatttacttacttgagagatatttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtctt |
410 |
Q |
| |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875246 |
gaattaaaatttacttacttgagagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtctt |
42875345 |
T |
|
| Q |
411 |
gtctagtgacaagaccaagttcaattgcctctttcaaagcttcaccaagagcttgttctgagccatatgctgcagcagtgtcaaagtgtctat |
503 |
Q |
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| T |
42875346 |
gtctagtgacaagaccaagttcaattgcttctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctat |
42875438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Original strand, 42884077 - 42884569
Alignment:
| Q |
11 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttagtgagaccaagtttcaatccttcttccatggattcccaaacacc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42884077 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42884176 |
T |
|
| Q |
111 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaatacaagtccaaatag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
42884177 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtag |
42884276 |
T |
|
| Q |
211 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884277 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
42884376 |
T |
|
| Q |
311 |
gaaccaaaatttacttacttgagagatatttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtctt |
410 |
Q |
| |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884377 |
gaattaaaatttacttacttgagagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtctt |
42884476 |
T |
|
| Q |
411 |
gtctagtgacaagaccaagttcaattgcctctttcaaagcttcaccaagagcttgttctgagccatatgctgcagcagtgtcaaagtgtctat |
503 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
42884477 |
gtctagtgacaagaccaagttcaattgcttctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctat |
42884569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Complemental strand, 42890355 - 42889863
Alignment:
| Q |
11 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttagtgagaccaagtttcaatccttcttccatggattcccaaacacc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42890355 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42890256 |
T |
|
| Q |
111 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaatacaagtccaaatag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
42890255 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtag |
42890156 |
T |
|
| Q |
211 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890155 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
42890056 |
T |
|
| Q |
311 |
gaaccaaaatttacttacttgagagatatttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtctt |
410 |
Q |
| |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890055 |
gaattaaaatttacttacttgagagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtctt |
42889956 |
T |
|
| Q |
411 |
gtctagtgacaagaccaagttcaattgcctctttcaaagcttcaccaagagcttgttctgagccatatgctgcagcagtgtcaaagtgtctat |
503 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
42889955 |
gtctagtgacaagaccaagttcaattgcttctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctat |
42889863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 13285 - 13216
Alignment:
| Q |
324 |
cttacttgagagatatttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttaga |
393 |
Q |
| |
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|||||| ||| ||| | ||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
13285 |
cttactggagtgatttctgaagagcaggaagaacaagatgaggaaaattatcagtaacccaaagtttaga |
13216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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