View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18421_high_8 (Length: 490)

Name: NF18421_high_8
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18421_high_8
NF18421_high_8
[»] chr4 (30 HSPs)
chr4 (11-264)||(28470504-28470757)
chr4 (23-229)||(28488007-28488207)
chr4 (291-439)||(28470784-28470932)
chr4 (28-229)||(30687372-30687570)
chr4 (293-420)||(43798269-43798396)
chr4 (303-425)||(49405676-49405798)
chr4 (294-422)||(80465-80593)
chr4 (374-420)||(51407995-51408041)
chr4 (374-420)||(55892031-55892077)
chr4 (325-426)||(7505528-7505629)
chr4 (291-426)||(11055266-11055401)
chr4 (294-426)||(22721296-22721427)
chr4 (380-420)||(28265719-28265759)
chr4 (376-420)||(51995128-51995172)
chr4 (325-420)||(12673074-12673169)
chr4 (375-426)||(16742376-16742427)
chr4 (321-412)||(56224140-56224231)
chr4 (326-424)||(40797830-40797928)
chr4 (322-407)||(44378246-44378331)
chr4 (297-346)||(48802596-48802645)
chr4 (320-420)||(13455695-13455795)
chr4 (312-403)||(49083297-49083388)
chr4 (440-474)||(28470975-28471009)
chr4 (380-426)||(52706271-52706317)
chr4 (321-402)||(9469772-9469853)
chr4 (321-402)||(36543776-36543857)
chr4 (338-406)||(5762605-5762673)
chr4 (376-420)||(9874254-9874298)
chr4 (376-412)||(19455212-19455248)
chr4 (376-412)||(38791742-38791778)
[»] chr1 (24 HSPs)
chr1 (293-410)||(39802823-39802940)
chr1 (291-426)||(15306458-15306593)
chr1 (323-426)||(31869591-31869694)
chr1 (294-420)||(50447309-50447435)
chr1 (294-406)||(29677579-29677691)
chr1 (375-419)||(31816617-31816661)
chr1 (377-420)||(7841674-7841717)
chr1 (380-419)||(48575127-48575166)
chr1 (374-420)||(7996019-7996065)
chr1 (328-426)||(14796590-14796688)
chr1 (328-426)||(14805464-14805562)
chr1 (294-420)||(28006318-28006444)
chr1 (321-413)||(25124938-25125030)
chr1 (376-424)||(27076557-27076605)
chr1 (293-345)||(29113645-29113697)
chr1 (293-420)||(42916160-42916287)
chr1 (297-412)||(42937045-42937160)
chr1 (380-426)||(19508582-19508628)
chr1 (376-422)||(20349196-20349242)
chr1 (375-425)||(45581049-45581099)
chr1 (377-422)||(24575960-24576005)
chr1 (376-425)||(45653472-45653521)
chr1 (376-412)||(12224629-12224665)
chr1 (376-412)||(35810768-35810804)
[»] chr3 (13 HSPs)
chr3 (291-426)||(28242548-28242683)
chr3 (325-426)||(9505161-9505262)
chr3 (297-413)||(18074547-18074663)
chr3 (291-426)||(52934777-52934912)
chr3 (372-422)||(31589668-31589718)
chr3 (323-412)||(52199426-52199515)
chr3 (376-412)||(54393497-54393533)
chr3 (375-406)||(9195879-9195910)
chr3 (325-420)||(12710701-12710796)
chr3 (326-420)||(20550248-20550342)
chr3 (294-420)||(30662177-30662303)
chr3 (374-412)||(33438785-33438823)
chr3 (293-342)||(33896797-33896846)
[»] chr5 (14 HSPs)
chr5 (294-406)||(10493953-10494065)
chr5 (293-425)||(32945062-32945194)
chr5 (292-425)||(10327896-10328029)
chr5 (374-420)||(5382871-5382917)
chr5 (376-426)||(41783375-41783425)
chr5 (321-422)||(20188968-20189069)
chr5 (321-402)||(38522925-38523006)
chr5 (325-412)||(1840741-1840828)
chr5 (376-426)||(19282154-19282204)
chr5 (380-426)||(26218101-26218147)
chr5 (294-348)||(36523719-36523773)
chr5 (374-424)||(36523803-36523853)
chr5 (376-420)||(17168489-17168533)
chr5 (372-420)||(26298357-26298405)
[»] chr6 (13 HSPs)
chr6 (294-420)||(18099784-18099910)
chr6 (294-420)||(3081764-3081890)
chr6 (321-422)||(10961840-10961941)
chr6 (294-406)||(7437272-7437384)
chr6 (297-420)||(5640298-5640421)
chr6 (375-425)||(17441207-17441257)
chr6 (294-420)||(18095487-18095613)
chr6 (378-426)||(11460054-11460102)
chr6 (294-420)||(13311990-13312116)
chr6 (380-426)||(33110512-33110558)
chr6 (376-420)||(6999317-6999361)
chr6 (296-348)||(10474454-10474506)
chr6 (378-422)||(11703570-11703614)
[»] chr7 (15 HSPs)
chr7 (293-424)||(222268-222399)
chr7 (374-420)||(18250039-18250085)
chr7 (323-425)||(21760624-21760726)
chr7 (374-420)||(49034270-49034316)
chr7 (377-426)||(24128540-24128589)
chr7 (293-420)||(33935480-33935607)
chr7 (380-426)||(11595836-11595882)
chr7 (380-426)||(40480090-40480136)
chr7 (380-426)||(45055787-45055833)
chr7 (374-420)||(46573658-46573704)
chr7 (374-419)||(35543603-35543648)
chr7 (376-420)||(29037826-29037870)
chr7 (376-420)||(32357016-32357060)
chr7 (376-420)||(36472494-36472538)
chr7 (375-411)||(48634501-48634537)
[»] scaffold0171 (1 HSPs)
scaffold0171 (322-420)||(21084-21181)
[»] chr2 (11 HSPs)
chr2 (375-420)||(13829927-13829972)
chr2 (294-403)||(40458889-40458998)
chr2 (328-425)||(24844707-24844804)
chr2 (372-412)||(20203768-20203808)
chr2 (323-425)||(3409229-3409331)
chr2 (326-413)||(11007025-11007112)
chr2 (377-420)||(31000891-31000934)
chr2 (380-426)||(2647014-2647060)
chr2 (374-424)||(27464614-27464664)
chr2 (293-410)||(26436321-26436438)
chr2 (376-420)||(30713206-30713250)
[»] scaffold0444 (1 HSPs)
scaffold0444 (322-407)||(826-911)
[»] chr8 (6 HSPs)
chr8 (375-420)||(43384843-43384888)
chr8 (379-422)||(22564059-22564102)
chr8 (379-422)||(28492705-28492748)
chr8 (374-420)||(1091775-1091821)
chr8 (374-420)||(27189128-27189174)
chr8 (376-422)||(33280021-33280067)
[»] scaffold0223 (1 HSPs)
scaffold0223 (377-425)||(14477-14525)
[»] scaffold0224 (1 HSPs)
scaffold0224 (293-420)||(7354-7481)
[»] scaffold0260 (1 HSPs)
scaffold0260 (376-422)||(11519-11565)
[»] scaffold0063 (1 HSPs)
scaffold0063 (374-418)||(51350-51394)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 28470504 - 28470757
Alignment:
Q  11 cacagaagcataagatgtagtagatcaacttccctgccagtcttagagctgaggctctcctctgagaaaatagttcccagtctattgcaaaacaaaagaa 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  28470504 cacataagcataagatgtagtagatcaacttccctgccagtcttagagctgaggctctcctatgagaaaatagttcccagtctactacaaaacaaaagaa 28470603  T
Q  111 aaggtgtgctaaactgcccaaatatcccctataattatcccaaatacatttacgtaactcttaaataactgctttaacatataactaccctattgcataa 210  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28470604 aaggtgtgctaaactgcccaaatatcccctataattattccaaatacatttacgtaactcttaaataattgctttaacatataactaccctattgcataa 28470703  T
Q  211 ttagattaactactcaatatttccttttaaattagtgtaattgattagaaatgg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470704 ttagattaactactcaatatttccttttaaattagtgtaattgattagaaatgg 28470757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 28488007 - 28488207
Alignment:
Q  23 agatgtagtagatcaacttccctgccagtcttagagctgaggctctcctctgagaaaatagttcccagtctattgcaaaacaaaagaaaaggtgtgctaa 122  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| |||||      ||||||||||||||||||||||||    
T  28488007 agatgtagtagatcaacttctctgccaatctcagagctgaggctctcctctgagaaaatagttctcagtc------aaaacaaaagaaaaggtgtgctaa 28488100  T
Q  123 actgcccaaatatcccctataattatcccaaatacatttacgtaactcttaaataactgctttaacatataactaccctattgcataattagattaacta 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28488101 actgcccaaatatcccctataattatcccaaatacatttacgtaactcttaaataactgctttaacatataactaccctattgcataattagattaacca 28488200  T
Q  223 ctcaata 229  Q
    || ||||    
T  28488201 cttaata 28488207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 291 - 439
Target Start/End: Original strand, 28470784 - 28470932
Alignment:
Q  291 agctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatg 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||    
T  28470784 agctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgaaattaatttacagttcacaattgactcatttggttcatg 28470883  T
Q  391 aaccaagttcaacgaattaattaccgaatcaagttcgtacttttttcga 439  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28470884 aaccaagttcaacgaattaattaccgaatcgagttcgtacttttttcga 28470932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 30687372 - 30687570
Alignment:
Q  28 tagtagatcaacttccctgccagtcttagagctgaggctctcctctgagaaaatagttcccagtctattgcaaaacaaaagaaaaggtgtgctaaactgc 127  Q
    |||||||| || ||||||||||| |||||||| |||||| ||||||||||||||||||||  ||||  ||||||| |||| ||||| | |||||||||||    
T  30687372 tagtagatgaagttccctgccagccttagagccgaggctttcctctgagaaaatagttcc--gtctcatgcaaaagaaaaaaaaag-tatgctaaactgc 30687468  T
Q  128 ccaaatatcccctataattatcccaaatacatttacgtaactcttaaataactgctttaacatataactaccctattgcataattagattaactactcaa 227  Q
    |||||||  ||||| ||||||||||  |||||||| ||||||| |||||||||||  |||| |||||||||||||||||| ||||| |||||||||| ||    
T  30687469 ccaaatactccctacaattatcccacctacatttatgtaactcctaaataactgccataacgtataactaccctattgcacaattaaattaactacttaa 30687568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 293 - 420
Target Start/End: Complemental strand, 43798396 - 43798269
Alignment:
Q  293 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaa 392  Q
    ||||||||| |||||||| || |||| ||||||||||||||| ||||||||||||||||| || ||||     |||   | ||||||||||||| | |||    
T  43798396 ctcatgaaccaaacgagtcgaactatacatagctcaagttcaactcatttatttaatgatcttcattttttactcaagctcgactcatttggttcaagaa 43798297  T
Q  393 ccaagttcaacgaattaattaccgaatc 420  Q
    || |||||||||| ||||||| ||||||    
T  43798296 ccgagttcaacgagttaattatcgaatc 43798269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 425
Target Start/End: Complemental strand, 49405798 - 49405676
Alignment:
Q  303 aaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaa 402  Q
    |||||||| || |||| |||| ||||||||| |||||||||||| | ||  ||||||| |  ||||   | ||||||||||||| || ||||||||||||    
T  49405798 aaacgagtcgaactatccataactcaagttcggctcatttatttgacgagcttaattttcgattcaagttcgactcatttggttcataaaccaagttcaa 49405699  T
Q  403 cgaattaattaccgaatcaagtt 425  Q
    ||||| |||||||||||| ||||    
T  49405698 cgaatcaattaccgaatcgagtt 49405676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 294 - 422
Target Start/End: Original strand, 80465 - 80593
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    |||||||| |||||||| ||  ||| | ||| |||||||| |||||||||||| | ||  ||||||| ||  |||   | ||||||||||||| ||||||    
T  80465 tcatgaaccaaacgagtcgaattatacgtagttcaagttcggctcatttatttgacgagcttaattttcaactcaagttcgactcatttggttcatgaac 80564  T
Q  394 caagttcaacgaattaattaccgaatcaa 422  Q
    |||||||||||||  ||||||||||||||    
T  80565 caagttcaacgaaacaattaccgaatcaa 80593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 51408041 - 51407995
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  51408041 gactcatttggttcatgaaccaagttgaacgaattaattaccgaatc 51407995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 55892077 - 55892031
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  55892077 gactcgtttggttcatgaaccaagttcaacgaattaattaccgaatc 55892031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 426
Target Start/End: Original strand, 7505528 - 7505629
Alignment:
Q  325 ctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagt 424  Q
    |||||||||| |||||||| |||| || ||||||||  || |||   | | ||||||||||| ||||| ||||||||||||| |||||||||| ||||||    
T  7505528 ctcaagttcaactcatttagttaacgaatttaatttttagctcaagttcggctcatttggttcatgaatcaagttcaacgaactaattaccgagtcaagt 7505627  T
Q  425 tc 426  Q
    ||    
T  7505628 tc 7505629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 426
Target Start/End: Complemental strand, 11055401 - 11055266
Alignment:
Q  291 agctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttat 389  Q
    ||||||||||| || ||||| || ||||  | ||||||||||| |||||||||||||| ||  ||||||| | | ||| | || | ||||||||||| ||    
T  11055401 agctcatgaaccaatcgagtcgaactatatacagctcaagttcggctcatttatttaacgaacttaattttccgctca-agttcagctcatttggttcat 11055303  T
Q  390 gaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||||||||| || ||||||| |||||| |||||    
T  11055302 gaaccaagttcaatgagttaattatcgaatcgagttc 11055266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 426
Target Start/End: Original strand, 22721296 - 22721427
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    |||||||| |||||||| || ||||  ||| |||||||||| ||||||||||||| ||  |||||||  || | |   ||| ||| ||||||| ||||||    
T  22721296 tcatgaaccaaacgagtcgaactatatataactcaagttcaactcatttatttaacgaacttaatttt-agcttaagtttgcctcgtttggttcatgaac 22721394  T
Q  394 caagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||||| ||| ||||||||||||| |||||    
T  22721395 caagttcaatgaactaattaccgaatcgagttc 22721427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 28265759 - 28265719
Alignment:
Q  380 tttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  28265759 tttggttcatgaaccaagttcaacgaattaattaccgaatc 28265719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 51995128 - 51995172
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||    
T  51995128 ctcatttggttcatgaaccaagttcaacgaattaattatcgaatc 51995172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 420
Target Start/End: Complemental strand, 12673169 - 12673074
Alignment:
Q  325 ctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    |||||||||  ||||||||||||||||  ||||||| ||  |||   | ||||||||||||| |||||||||||||||||| | ||||| ||||||    
T  12673169 ctcaagttcgactcatttatttaatgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatc 12673074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 16742427 - 16742376
Alignment:
Q  375 actcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||| |||||    
T  16742427 actcatttggttcatgaaccaagttcaacgaatcaattgccgaatcgagttc 16742376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 321 - 412
Target Start/End: Original strand, 56224140 - 56224231
Alignment:
Q  321 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaatt 412  Q
    |||| ||||||||| || ||||| |||| || |||||||| ||| |||   | | |||||||||||||| ||||||||||||||||||||||    
T  56224140 atagttcaagttcaacttatttaattaacgaatttaattttcagctcaagttcggctcatttggtttattaaccaagttcaacgaattaatt 56224231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 424
Target Start/End: Original strand, 40797830 - 40797928
Alignment:
Q  326 tcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagt 424  Q
    ||||||||| ||||||||||||| ||  ||||||| ||  |||   | ||||||||||||| ||||||||||||||| |||  ||||| ||||||||||    
T  40797830 tcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaatgaaccaattatcgaatcaagt 40797928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 407
Target Start/End: Original strand, 44378246 - 44378331
Alignment:
Q  322 tagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaat 407  Q
    ||||||||||||| ||||||||||||| ||  ||||||| ||   || | |  |||||||||||| ||||||||||||||||||||    
T  44378246 tagctcaagttcaactcatttatttaacgagcttaattttcaacccaaattcaactcatttggttcatgaaccaagttcaacgaat 44378331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 48802645 - 48802596
Alignment:
Q  297 tgaactaaacgagttgagctattcatagctcaagttcagctcatttattt 346  Q
    ||||| |||||||| || ||||||||||||||||||| ||||||||||||    
T  48802645 tgaaccaaacgagtcgaactattcatagctcaagttcggctcatttattt 48802596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 420
Target Start/End: Original strand, 13455695 - 13455795
Alignment:
Q  320 catagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaat 419  Q
    ||||| ||||||||| ||| ||||||||| ||  |||||||  || |||   | ||||||||||||| || || |||||||||||||||||||| |||||    
T  13455695 catagttcaagttcaactcgtttatttaacgaacttaattttgagctcaagttggactcatttggttcataaatcaagttcaacgaattaattatcgaat 13455794  T
Q  420 c 420  Q
    |    
T  13455795 c 13455795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 49083388 - 49083297
Alignment:
Q  312 gagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaac 403  Q
    |||||||  ||| ||||||| ||||||||||| |||| || |||||||| ||| |||   |  ||||||| |||||||||||||||||||||    
T  49083388 gagctatatataactcaagtacagctcatttaattaacgaatttaattttcagatcaagttcaactcattaggtttatgaaccaagttcaac 49083297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 474
Target Start/End: Original strand, 28470975 - 28471009
Alignment:
Q  440 caatatgctgttgcgagaaaactggatcaccaaca 474  Q
    |||||||||||||||| ||||||||||||||||||    
T  28470975 caatatgctgttgcgacaaaactggatcaccaaca 28471009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 52706271 - 52706317
Alignment:
Q  380 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||| |||||||||||| |||||| |||||||||| ||||||||    
T  52706271 tttggttcatgaaccaagtttaacgaactaattaccgagtcaagttc 52706317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 402
Target Start/End: Original strand, 9469772 - 9469853
Alignment:
Q  321 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaa 402  Q
    |||| |||||||||||||||||| | || ||  ||||||| ||| |||   ||| ||||||||||| |||||||||||||||    
T  9469772 atagttcaagttcagctcatttaatcaacgaacttaattttcagctcaagtttggctcatttggttcatgaaccaagttcaa 9469853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 402
Target Start/End: Original strand, 36543776 - 36543857
Alignment:
Q  321 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaa 402  Q
    |||| |||||||||||||||||| |||| ||  ||||||| ||| |||   ||| || |||||||| |||||||||||||||    
T  36543776 atagttcaagttcagctcatttaattaacgaacttaattttcagctcaagtttggcttatttggttcatgaaccaagttcaa 36543857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 5762673 - 5762605
Alignment:
Q  338 catttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaa 406  Q
    ||||||||||| || |||||||| ||| ||| | |  |||||||||||| ||||||||||||| |||||    
T  5762673 catttatttaacgaatttaattttcagctcaaactcaactcatttggttcatgaaccaagttcgacgaa 5762605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 9874298 - 9874254
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||| ||| ||||| ||||||||||||||||| |||||    
T  9874298 ctcatttggttcatgtaccaatttcaacgaattaattactgaatc 9874254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 412
Target Start/End: Complemental strand, 19455248 - 19455212
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaatt 412  Q
    |||||||| || |||||||||||||||||||||||||    
T  19455248 ctcatttgattcatgaaccaagttcaacgaattaatt 19455212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 38791742 - 38791778
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaatt 412  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  38791742 ctcatttggttcatgaaccaagttcaacgagttaatt 38791778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 39802940 - 39802823
Alignment:
Q  293 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaa 392  Q
    ||||||||| |||||| | ||||||| |||||||||||||| |||||||||||||| ||  ||||||| ||  |||   | ||||||||||||| |||||    
T  39802940 ctcatgaaccaaacgaatcgagctatacatagctcaagttcggctcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaa 39802841  T
Q  393 ccaagttcaacgaattaa 410  Q
    ||| ||||||||||||||    
T  39802840 ccatgttcaacgaattaa 39802823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 426
Target Start/End: Original strand, 15306458 - 15306593
Alignment:
Q  291 agctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttat 389  Q
    ||||||||||| || ||||| || ||||  | ||||||||||| |||||||||||||||||  ||||||| | | ||| | || | ||||||||||| ||    
T  15306458 agctcatgaaccaatcgagtcgaactatatacagctcaagttcggctcatttatttaatgaacttaattttccgctca-agttcagctcatttggttcat 15306556  T
Q  390 gaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||||||||| |||||||||| |||||| |||||    
T  15306557 gaaccaagttcaatgaattaattatcgaatcgagttc 15306593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 426
Target Start/End: Original strand, 31869591 - 31869694
Alignment:
Q  323 agctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 422  Q
    ||||||||||| |||||||||||||| ||  ||||||| ||| | |   | | ||||||||||| |||||||||||||||||| ||||||  ||||||||    
T  31869591 agctcaagttcggctcatttatttaacgaacttaattttcagcttaagttcggctcatttggttcatgaaccaagttcaacgatttaattgtcgaatcaa 31869690  T
Q  423 gttc 426  Q
    ||||    
T  31869691 gttc 31869694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 294 - 420
Target Start/End: Original strand, 50447309 - 50447435
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    |||||||| |||||||| |||  |  ||||| ||||||||| ||||||||||||| ||  |||||||  ||||||   | | ||||||||||| || |||    
T  50447309 tcatgaaccaaacgagtcgagtcaaacatagttcaagttcaactcatttatttaacgaacttaattttaagttcaagttcggctcatttggttcataaac 50447408  T
Q  394 caagttcaacgaattaattaccgaatc 420  Q
    |||||| ||||||||||||| ||||||    
T  50447409 caagtttaacgaattaattatcgaatc 50447435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 406
Target Start/End: Complemental strand, 29677691 - 29677579
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    |||||||  |||||||| || |||| | ||| ||||||||||||||||||||||| ||  ||||||| ||  |||   | |||||||||||||  |||||    
T  29677691 tcatgaagcaaacgagtcgaactatacttagttcaagttcagctcatttatttaaagagcttaattttcaactcaagttcgactcatttggttcgtgaac 29677592  T
Q  394 caagttcaacgaa 406  Q
    |||||||||||||    
T  29677591 caagttcaacgaa 29677579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 31816617 - 31816661
Alignment:
Q  375 actcatttggtttatgaaccaagttcaacgaattaattaccgaat 419  Q
    |||||||||||| |||||||||||||||||||| |||||||||||    
T  31816617 actcatttggttcatgaaccaagttcaacgaatcaattaccgaat 31816661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 420
Target Start/End: Original strand, 7841674 - 7841717
Alignment:
Q  377 tcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    |||||||||| |||||||||||||||||||||||||| ||||||    
T  7841674 tcatttggttcatgaaccaagttcaacgaattaattatcgaatc 7841717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 419
Target Start/End: Complemental strand, 48575166 - 48575127
Alignment:
Q  380 tttggtttatgaaccaagttcaacgaattaattaccgaat 419  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  48575166 tttggttcatgaaccaagttcaacgaattaattaccgaat 48575127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 7996019 - 7996065
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||    
T  7996019 gactcattaggtttatgaaccaagttcaacgaatcaattatcgaatc 7996065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 426
Target Start/End: Original strand, 14796590 - 14796688
Alignment:
Q  328 aagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||| ||||||||||||| ||  |||||||| ||||||   |  ||| | |||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  14796590 aagttcaactcatttatttaacgaacttaatttaaagttcaagttcaacttaattggttcatgaaccacgttcaacgaattaattatcgagtcaagttc 14796688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 426
Target Start/End: Original strand, 14805464 - 14805562
Alignment:
Q  328 aagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||| ||||||||||||| ||  |||||||| ||||||   |  ||| | |||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  14805464 aagttcaactcatttatttaacgaacttaatttaaagttcaagttcaacttaattggttcatgaaccacgttcaacgaattaattatcgagtcaagttc 14805562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 420
Target Start/End: Original strand, 28006318 - 28006444
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    ||||||||||||||||| || | || |  | |||||||||  ||||||||||||| ||  ||||||| ||  |||   | ||||||||||||| ||||||    
T  28006318 tcatgaactaaacgagtcgaaccatactcaactcaagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaac 28006417  T
Q  394 caagttcaacgaattaattaccgaatc 420  Q
    |||||||||||| | ||||| ||||||    
T  28006418 caagttcaacgagtcaattatcgaatc 28006444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 413
Target Start/End: Complemental strand, 25125030 - 25124938
Alignment:
Q  321 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaatta 413  Q
    ||||||||||||||||||| ||| || | ||  ||||||| ||| |||   | | ||||||||||| |||||||||||||||||||| |||||    
T  25125030 atagctcaagttcagctcaattagttcacgaaattaattttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaatta 25124938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 27076605 - 27076557
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagt 424  Q
    ||||||| ||| ||| |||||||||||||||||||||| ||||||||||    
T  27076605 ctcatttagttcatggaccaagttcaacgaattaattatcgaatcaagt 27076557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 29113697 - 29113645
Alignment:
Q  293 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatt 345  Q
    ||||||||| ||||||||||| |||| ||||||||||||||| ||| ||||||    
T  29113697 ctcatgaaccaaacgagttgaactatacatagctcaagttcacctcttttatt 29113645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 420
Target Start/End: Complemental strand, 42916287 - 42916160
Alignment:
Q  293 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaa 392  Q
    ||||||||| |||||||| || ||||  || | |||||||||||||| ||| |||  ||  ||||||| ||| |||   | | ||||||||||| |||||    
T  42916287 ctcatgaaccaaacgagtcgacctatatatggttcaagttcagctcaattagttagcgaacttaattttcagctcaagttcggctcatttggttcatgaa 42916188  T
Q  393 ccaagttcaacgaattaattaccgaatc 420  Q
    |||||||| |||||| ||||| ||||||    
T  42916187 ccaagttcgacgaatcaattatcgaatc 42916160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 412
Target Start/End: Original strand, 42937045 - 42937160
Alignment:
Q  297 tgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaa 396  Q
    ||||| ||||||||||| |||| |||||||||||||||||||| ||| || | ||  |||||||  || |||   | | |||||||| || |||||||||    
T  42937045 tgaaccaaacgagttgaactatacatagctcaagttcagctcaattagttgacgaacttaattttaagctcaagttcggctcatttgattcatgaaccaa 42937144  T
Q  397 gttcaacgaattaatt 412  Q
    |||| |||||| ||||    
T  42937145 gttcgacgaatcaatt 42937160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 19508582 - 19508628
Alignment:
Q  380 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  19508582 tttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 19508628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 20349196 - 20349242
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 422  Q
    |||||||||| |||||| |||||||||||||||||||| ||| ||||    
T  20349196 ctcatttggtatatgaatcaagttcaacgaattaattatcgagtcaa 20349242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 45581099 - 45581049
Alignment:
Q  375 actcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagtt 425  Q
    |||||||||||| ||||||||||||||||||  |||||| |||||| ||||    
T  45581099 actcatttggttcatgaaccaagttcaacgagataattatcgaatcgagtt 45581049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 24575960 - 24576005
Alignment:
Q  377 tcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 422  Q
    |||||||||| |||||||||||||||||| | ||||| ||||||||    
T  24575960 tcatttggttcatgaaccaagttcaacgagtcaattatcgaatcaa 24576005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Complemental strand, 45653521 - 45653472
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagtt 425  Q
    ||||||||||| ||||||||||||||||||| |||||  |||||| ||||    
T  45653521 ctcatttggttcatgaaccaagttcaacgaaataattgtcgaatcgagtt 45653472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 412
Target Start/End: Complemental strand, 12224665 - 12224629
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaatt 412  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  12224665 ctcatttggttcatgaaccaagttcaacgagttaatt 12224629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 35810768 - 35810804
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaatt 412  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  35810768 ctcatttggttcatgaaccaagttcaacgaatcaatt 35810804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 291 - 426
Target Start/End: Original strand, 28242548 - 28242683
Alignment:
Q  291 agctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttat 389  Q
    ||||||||||| || ||||| || ||||  | ||||||||||||| |||||||||||| || |||||||| ||| ||| |||| | ||||||||||| ||    
T  28242548 agctcatgaaccaaccgagtcgaactatatacagctcaagttcagatcatttatttaacgaatttaattttcagctca-aattcagctcatttggttcat 28242646  T
Q  390 gaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||| |||||||| ||||||  ||||||||||||    
T  28242647 gaaccaaattcaacgagttaattgtcgaatcaagttc 28242683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 426
Target Start/End: Complemental strand, 9505262 - 9505161
Alignment:
Q  325 ctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagt 424  Q
    |||||||||||||||||||||||| ||  ||||||| ||| |||   |  |||||||||||| |||||||||||||||||| ||||||  |||||| |||    
T  9505262 ctcaagttcagctcatttatttaacgaacttaattttcagctcaagttcaactcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagt 9505163  T
Q  425 tc 426  Q
    ||    
T  9505162 tc 9505161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 297 - 413
Target Start/End: Original strand, 18074547 - 18074663
Alignment:
Q  297 tgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaa 396  Q
    |||||||||| ||||||  |||  ||||||||| ||||||||||||| |||| ||  ||||||| ||||||| | |  |||||||| ||| ||||| |||    
T  18074547 tgaactaaacaagttgaattatatatagctcaatttcagctcatttagttaacgaacttaattttcagttcaaattcaactcatttagttcatgaaacaa 18074646  T
Q  397 gttcaacgaattaatta 413  Q
     ||||||||||||||||    
T  18074647 attcaacgaattaatta 18074663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 426
Target Start/End: Original strand, 52934777 - 52934912
Alignment:
Q  291 agctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttat 389  Q
    ||||||||||| || ||||| || ||||  |||| |||||||| |||||||||||||| ||  ||||||| | | ||| | || | ||||||||||| ||    
T  52934777 agctcatgaaccaatcgagtcgaactatatatagatcaagttcggctcatttatttaacgaacttaattttctgctca-agttcagctcatttggttcat 52934875  T
Q  390 gaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||||||||| || ||||||| |||||| |||||    
T  52934876 gaaccaagttcaatgagttaattatcgaatcgagttc 52934912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 31589668 - 31589718
Alignment:
Q  372 ttgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 422  Q
    |||||| |||||||||||||||||||| ||| ||||| |||||||||||||    
T  31589668 ttgacttatttggtttatgaaccaagtccaatgaattgattaccgaatcaa 31589718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 52199426 - 52199515
Alignment:
Q  323 agctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttatgaaccaagttcaacgaattaatt 412  Q
    |||||||||||||||||||| ||||| ||  ||||||| ||| ||| | || | ||| ||||||| |||||||||||||||||||||||||    
T  52199426 agctcaagttcagctcatttgtttaacgaacttaattttcagctca-agttcagctcgtttggttcatgaaccaagttcaacgaattaatt 52199515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 412
Target Start/End: Complemental strand, 54393533 - 54393497
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaatt 412  Q
    |||||||||||||||||||||||||||||||| ||||    
T  54393533 ctcatttggtttatgaaccaagttcaacgaatcaatt 54393497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 9195910 - 9195879
Alignment:
Q  375 actcatttggtttatgaaccaagttcaacgaa 406  Q
    ||||||||||||||||||||||||||||||||    
T  9195910 actcatttggtttatgaaccaagttcaacgaa 9195879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 420
Target Start/End: Original strand, 12710701 - 12710796
Alignment:
Q  325 ctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    |||||||||  ||||||||||||| ||  ||||||| ||  |||   | ||||||||||||| |||||||||||||||||| | ||||| ||||||    
T  12710701 ctcaagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatc 12710796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 420
Target Start/End: Complemental strand, 20550342 - 20550248
Alignment:
Q  326 tcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    |||||| || ||||||||||||| || |||||||| ||  |||   | |||||||||||||  ||||||||||||||| ||| ||||| ||||||    
T  20550342 tcaagtacaactcatttatttaacgaatttaattttcaactcatgttcgactcatttggttcgtgaaccaagttcaacaaatcaattatcgaatc 20550248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 420
Target Start/End: Complemental strand, 30662303 - 30662177
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    |||||||| |||||||| || |||| |  | |||||||||  ||||||||||||| ||  ||||||| ||  |||   | |||||||||| || ||||||    
T  30662303 tcatgaaccaaacgagtcgaactatactcaactcaagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttgattcatgaac 30662204  T
Q  394 caagttcaacgaattaattaccgaatc 420  Q
    |||||||||||| | ||||| ||||||    
T  30662203 caagttcaacgagtcaattatcgaatc 30662177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 33438823 - 33438785
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaatt 412  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  33438823 gactcatttggttcatgaaccaagttcaacgaatcaatt 33438785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 33896797 - 33896846
Alignment:
Q  293 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcattt 342  Q
    |||||||||||||||||| || ||||  ||| ||||||||||||||||||    
T  33896797 ctcatgaactaaacgagtcgaactatatataactcaagttcagctcattt 33896846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 406
Target Start/End: Original strand, 10493953 - 10494065
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    |||||||| |||||||| || |||| | ||| ||||||||||||||||||||||| ||  ||||||| ||  |||   | |||||||||||||| |||||    
T  10493953 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttatttaacgagcttaattttcaactcaagttcgactcatttggtttgtgaac 10494052  T
Q  394 caagttcaacgaa 406  Q
    |||||||||||||    
T  10494053 caagttcaacgaa 10494065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 425
Target Start/End: Complemental strand, 32945194 - 32945062
Alignment:
Q  293 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaa 392  Q
    ||||||||| ||||||||||| |||| |||| ||| ||||| |||||||||||| | ||  |||||||     |||   | ||||||||||||| |||||    
T  32945194 ctcatgaacaaaacgagttgaactatgcataactccagttcggctcatttatttgacgagcttaatttttgactcaagttcgactcatttggttcatgaa 32945095  T
Q  393 ccaagttcaacgaattaattaccgaatcaagtt 425  Q
    ||||||| ||||||| |||||||||||| ||||    
T  32945094 ccaagtttaacgaatcaattaccgaatcgagtt 32945062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 425
Target Start/End: Original strand, 10327896 - 10328029
Alignment:
Q  292 gctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatga 391  Q
    |||||||||| |||||||| || |||| ||||||||||||| |  ||||||||||   || |||||| | |   |||   |||| |||||||||| ||||    
T  10327896 gctcatgaacaaaacgagtcgaactatacatagctcaagtttaattcatttatttgtcgagtttaatattcgactcaagtttgattcatttggttcatga 10327995  T
Q  392 accaagttcaacgaattaattaccgaatcaagtt 425  Q
    | |||||||||||||| |||||||||||| ||||    
T  10327996 atcaagttcaacgaatcaattaccgaatcgagtt 10328029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 5382917 - 5382871
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  5382917 gactcgtttggttcatgaatcaagttcaacgaattaattaccgaatc 5382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 41783375 - 41783425
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||||||| ||||||||||||||||||| |||||||||| || |||||    
T  41783375 ctcatttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 41783425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 422
Target Start/End: Original strand, 20188968 - 20189069
Alignment:
Q  321 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||||||||||| ||| || | ||  |||||||  ||||||   | | ||||||||||| ||||||||||||| |||||| ||||| ||||||    
T  20188968 atagctcaagttcagctcaattagttgacgaacttaatttttagttcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatc 20189067  T
Q  421 aa 422  Q
    ||    
T  20189068 aa 20189069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 402
Target Start/End: Complemental strand, 38523006 - 38522925
Alignment:
Q  321 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaa 402  Q
    |||| |||||||||||||||||| |||| ||  ||||||| ||| |||   ||| ||||||||||| |||||||||||||||    
T  38523006 atagttcaagttcagctcatttaattaacgaacttaattttcagctcaagtttggctcatttggttcatgaaccaagttcaa 38522925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 1840828 - 1840741
Alignment:
Q  325 ctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttatgaaccaagttcaacgaattaatt 412  Q
    |||||||||||||||||||||| | ||  ||||||| ||| ||| | || | ||||||||||| |||||||||||||||||| ||||||    
T  1840828 ctcaagttcagctcatttatttcacgaacttaattttcagctca-agttcagctcatttggttcatgaaccaagttcaacgagttaatt 1840741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 19282204 - 19282154
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||||||| |||||||||||||||||| ||||||  ||||| ||||||    
T  19282204 ctcatttggttcatgaaccaagttcaacgagttaattgtcgaatgaagttc 19282154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 26218101 - 26218147
Alignment:
Q  380 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  26218101 tttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 26218147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 36523719 - 36523773
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaa 348  Q
    |||||||| |||||| |  | |||| |||||||||||||||||||||||||||||    
T  36523719 tcatgaaccaaacgaatcaaactatacatagctcaagttcagctcatttatttaa 36523773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 36523803 - 36523853
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagt 424  Q
    ||||||||||||| ||||||||||||||| ||||  |||| ||||||||||    
T  36523803 gactcatttggttcatgaaccaagttcaatgaatctattatcgaatcaagt 36523853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 17168533 - 17168489
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    |||||||||||| ||||||||||||||| |||||| || ||||||    
T  17168533 ctcatttggtttgtgaaccaagttcaacaaattaaatatcgaatc 17168489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 26298357 - 26298405
Alignment:
Q  372 ttgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    |||||||||| |||| ||||| |||||||||||||| ||||| ||||||    
T  26298357 ttgactcattaggttcatgaatcaagttcaacgaatcaattatcgaatc 26298405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 420
Target Start/End: Original strand, 18099784 - 18099910
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    |||||||| |||||| |||| |||| ||||||||||||||| ||||||||||||| ||  ||||||   |  ||| | | |||||||||||||  |||||    
T  18099784 tcatgaaccaaacgaattgaactatgcatagctcaagttcatctcatttatttaacgaacttaattgttaactcaaattcgactcatttggttcgtgaac 18099883  T
Q  394 caagttcaacgaattaattaccgaatc 420  Q
    ||||||||||||||  |||| ||||||    
T  18099884 caagttcaacgaatccattatcgaatc 18099910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 294 - 420
Target Start/End: Complemental strand, 3081890 - 3081764
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    |||||||| |||||||| || |||| | ||| |||||||||||||||||| |||| ||  ||||||| ||  |||   | |||||||||||||  |||||    
T  3081890 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttaattaacgagcttaattttcaactcaagttcgactcatttggttcgtgaac 3081791  T
Q  394 caagttcaacgaattaattaccgaatc 420  Q
    |||||||||||||  ||||| ||||||    
T  3081790 caagttcaacgaaccaattatcgaatc 3081764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 422
Target Start/End: Complemental strand, 10961941 - 10961840
Alignment:
Q  321 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    |||| |||||||||||||| ||| || | ||  ||||||| ||| ||| | | ||||||||||||| |||||||||||||||||||| ||||  ||||||    
T  10961941 atagttcaagttcagctcaattagttgacgaacttaattttcagctcaaattcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatc 10961842  T
Q  421 aa 422  Q
    ||    
T  10961841 aa 10961840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 406
Target Start/End: Original strand, 7437272 - 7437384
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    |||||||| |||||||| || |||| | ||| ||||||||||||||||||||||| ||  ||||||| ||  | |   | |||||||||||||  |||||    
T  7437272 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttatttaacgagcttaattttcaactaaagttcgactcatttggttcgtgaac 7437371  T
Q  394 caagttcaacgaa 406  Q
    |||||||||||||    
T  7437372 caagttcaacgaa 7437384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 420
Target Start/End: Complemental strand, 5640421 - 5640298
Alignment:
Q  297 tgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaa 396  Q
    ||||| |||||||| || ||||  |||| |||||||||||||| ||| || | ||  ||||||| |||||||   | | ||||||||||| |||||||||    
T  5640421 tgaaccaaacgagtcgaactatatatagttcaagttcagctcaattagttgacgaacttaattttcagttcaagttcggctcatttggttcatgaaccaa 5640322  T
Q  397 gttcaacgaattaattaccgaatc 420  Q
    |||| |||||| ||||| ||||||    
T  5640321 gttcgacgaatcaattatcgaatc 5640298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 17441207 - 17441257
Alignment:
Q  375 actcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagtt 425  Q
    |||||||||||| |||||| ||||||||||||||||||||| |||| ||||    
T  17441207 actcatttggttcatgaactaagttcaacgaattaattaccaaatcgagtt 17441257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 420
Target Start/End: Original strand, 18095487 - 18095613
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    |||||||| ||| || |||| |||| ||||||||||||||| ||||||||||||| ||  |||||||  |  |||   | |||| ||||||||  |||||    
T  18095487 tcatgaacaaaatgaattgaactatgcatagctcaagttcatctcatttatttaacgaacttaatttttaactcaagttcgacttatttggttcgtgaac 18095586  T
Q  394 caagttcaacgaattaattaccgaatc 420  Q
    ||||||||||||||  |||| ||||||    
T  18095587 caagttcaacgaatccattatcgaatc 18095613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 11460102 - 11460054
Alignment:
Q  378 catttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||||| |||||||||||||||||||| ||||| |||||| |||||    
T  11460102 catttggttcatgaaccaagttcaacgaatcaattatcgaatcgagttc 11460054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 420
Target Start/End: Original strand, 13311990 - 13312116
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    |||||||| ||||||||||| | || |  || ||||||||| ||||||||||||| ||  ||||||| ||  |||   | ||||||||||||| ||||||    
T  13311990 tcatgaaccaaacgagttgaaccatactaagttcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaac 13312089  T
Q  394 caagttcaacgaattaattaccgaatc 420  Q
    ||||| ||| |||  ||||| ||||||    
T  13312090 caagtccaatgaaccaattatcgaatc 13312116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 33110512 - 33110558
Alignment:
Q  380 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  33110512 tttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 33110558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 6999317 - 6999361
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||| ||| || ||||||||||||||||||||||| ||||||    
T  6999317 ctcatttagttcattaaccaagttcaacgaattaattatcgaatc 6999361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 10474506 - 10474454
Alignment:
Q  296 atgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaa 348  Q
    |||||| ||||||||||| || | ||||||||||||||| |||||||| ||||    
T  10474506 atgaaccaaacgagttgaactttgcatagctcaagttcaactcatttagttaa 10474454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 11703614 - 11703570
Alignment:
Q  378 catttggtttatgaaccaagttcaacgaattaattaccgaatcaa 422  Q
    ||||||||| || ||| ||||||||| ||||||||||||||||||    
T  11703614 catttggttcataaactaagttcaacaaattaattaccgaatcaa 11703570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 424
Target Start/End: Complemental strand, 222399 - 222268
Alignment:
Q  293 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttatga 391  Q
    ||||||||| || ||||| || ||||  | |||||||||||||||||||| ||||| || |||||||| ||||||| | || | ||| ||||||| ||||    
T  222399 ctcatgaaccaaccgagtcgaactatataaagctcaagttcagctcatttgtttaacgaatttaattttcagttca-agttcagctcgtttggttcatga 222301  T
Q  392 accaagttcaacgaattaattaccgaatcaagt 424  Q
    ||||| |||||||| ||||||  ||||||||||    
T  222300 accaaattcaacgagttaattgtcgaatcaagt 222268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 18250085 - 18250039
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  18250085 gactcatttggttcatgaaccaagttcaacgaatcaattatcgaatc 18250039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 425
Target Start/End: Complemental strand, 21760726 - 21760624
Alignment:
Q  323 agctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 422  Q
    |||||||||||| ||||||||||||| || |||| ||| ||  |||   | |||||||||||||  ||||| ||||||||||||| ||||| |||||| |    
T  21760726 agctcaagttcaactcatttatttaacgagtttagttttcaactcaagttcgactcatttggttcgtgaacaaagttcaacgaatcaattatcgaatcga 21760627  T
Q  423 gtt 425  Q
    |||    
T  21760626 gtt 21760624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 49034316 - 49034270
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||||| |||||||||||||||||||  ||||||||||||    
T  49034316 gactcatttggttcatgaaccaagttcaacgaaacaattaccgaatc 49034270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 24128589 - 24128540
Alignment:
Q  377 tcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    |||||||||| ||||||||| |||||||| ||||||| ||||||||||||    
T  24128589 tcatttggttcatgaaccaaattcaacgagttaattatcgaatcaagttc 24128540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 420
Target Start/End: Original strand, 33935480 - 33935607
Alignment:
Q  293 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttatga 391  Q
    |||||| ||||| ||||| || ||||  | |||||||||||| ||||||| ||||| ||  ||||||| ||| ||| | || | ||| ||||||| ||||    
T  33935480 ctcatggactaaccgagtcgaactatataaagctcaagttcatctcatttgtttaacgaacttaattttcagctca-agttcagctcgtttggttcatga 33935578  T
Q  392 accaagttcaacgaattaattaccgaatc 420  Q
    |||||||||||||| ||||||| ||||||    
T  33935579 accaagttcaacgagttaattatcgaatc 33935607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 426
Target Start/End: Complemental strand, 11595882 - 11595836
Alignment:
Q  380 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  11595882 tttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 11595836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 426
Target Start/End: Complemental strand, 40480136 - 40480090
Alignment:
Q  380 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  40480136 tttggttcatgaaccaagttcaacgaactaattaccgactcgagttc 40480090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 45055787 - 45055833
Alignment:
Q  380 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  45055787 tttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 45055833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 46573704 - 46573658
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||||| |||||||||||||||||| | ||||| ||||||    
T  46573704 gactcatttggttcatgaaccaagttcaacgagtcaattatcgaatc 46573658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 419
Target Start/End: Complemental strand, 35543648 - 35543603
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaat 419  Q
    ||||||||| ||| |||||||||||||||||||| ||||| |||||    
T  35543648 gactcatttagttcatgaaccaagttcaacgaatcaattatcgaat 35543603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 29037870 - 29037826
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||| |||||| ||||||| | ||||||||||||||||    
T  29037870 ctcatttggttcatgaacaaagttcagcaaattaattaccgaatc 29037826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 32357016 - 32357060
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||| ||| ||||| |||||||||||||||||||| ||||||    
T  32357016 ctcatttagttcatgaatcaagttcaacgaattaattatcgaatc 32357060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 36472494 - 36472538
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||| |||||||||||||||||||| | ||| ||||||    
T  36472494 ctcatttggttcatgaaccaagttcaacgaatcatttatcgaatc 36472538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 48634501 - 48634537
Alignment:
Q  375 actcatttggtttatgaaccaagttcaacgaattaat 411  Q
    |||||||||||| |||||||||||||||||| |||||    
T  48634501 actcatttggttcatgaaccaagttcaacgagttaat 48634537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 322 - 420
Target Start/End: Original strand, 21084 - 21181
Alignment:
Q  322 tagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||||| ||||||||||||||||  ||||||| ||  |||   | ||||| ||||||| |||||||||||||||||||| ||||| ||||||    
T  21084 tagctcaagttcaactcatttatttaatgagcttaattttcaactcaagttcgactc-tttggttcatgaaccaagttcaacgaatcaattatcgaatc 21181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 13829927 - 13829972
Alignment:
Q  375 actcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  13829927 actcatttggtttatgaaccaagttcaacgaatcaattatcgaatc 13829972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 403
Target Start/End: Original strand, 40458889 - 40458998
Alignment:
Q  294 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 393  Q
    |||||||| |||||||| || |||| | ||| ||||||||||||||||||||||| ||  ||||||| ||  |||   | |||||||||||||  |||||    
T  40458889 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaac 40458988  T
Q  394 caagttcaac 403  Q
    ||||||||||    
T  40458989 caagttcaac 40458998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 425
Target Start/End: Complemental strand, 24844804 - 24844707
Alignment:
Q  328 aagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagtt 425  Q
    ||||||||||||||||||||  || |||||||| ||| ||| | || | ||||||||||| ||||||||||||||||||  ||||| ||||||| ||||    
T  24844804 aagttcagctcatttatttatcgaatttaattttcagctca-agttcagctcatttggttcatgaaccaagttcaacgagataattgccgaatcgagtt 24844707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 20203808 - 20203768
Alignment:
Q  372 ttgactcatttggtttatgaaccaagttcaacgaattaatt 412  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  20203808 ttgactcatttggttcatgaaccaagttcaacgaatcaatt 20203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 425
Target Start/End: Complemental strand, 3409331 - 3409229
Alignment:
Q  323 agctcaagttcagctcatttatttaatgattttaatttacagttcacaattgact-catttggtttatgaaccaagttcaacgaattaattaccgaatca 421  Q
    ||||||| |||||||||||||||||| ||  ||||||| ||| ||| | || | | ||||||||| |||||||||||||||||| ||||||  ||||||     
T  3409331 agctcaaattcagctcatttatttaacgaacttaattttcagctca-agttcagttcatttggttcatgaaccaagttcaacgagttaattgtcgaatcg 3409233  T
Q  422 agtt 425  Q
    ||||    
T  3409232 agtt 3409229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 413
Target Start/End: Complemental strand, 11007112 - 11007025
Alignment:
Q  326 tcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaatta 413  Q
    ||||||||| ||||||||||||| ||  ||||||| ||  |||   | |||||||||||||  ||||||||||||||||||| |||||    
T  11007112 tcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaaccaagttcaacgaatcaatta 11007025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 420
Target Start/End: Original strand, 31000891 - 31000934
Alignment:
Q  377 tcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||    
T  31000891 tcatttggttcatgaatcaagttcatcgaattaattaccgaatc 31000934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 426
Target Start/End: Complemental strand, 2647060 - 2647014
Alignment:
Q  380 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 426  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  2647060 tttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 2647014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 27464664 - 27464614
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagt 424  Q
    ||||||||||||| ||||||||| |||||| ||| ||||| ||||||||||    
T  27464664 gactcatttggttcatgaaccaaattcaacaaatcaattatcgaatcaagt 27464614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 410
Target Start/End: Original strand, 26436321 - 26436438
Alignment:
Q  293 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaa 392  Q
    |||||||||  ||||||| || ||||   |||||||||||||||||||||| |||| ||  ||||||| ||| ||||  |   ||| || |||| |||||    
T  26436321 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcacgttcagctcgttaggttcatgaa 26436420  T
Q  393 ccaagttcaacgaattaa 410  Q
    |||||||||||| |||||    
T  26436421 ccaagttcaacggattaa 26436438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 30713206 - 30713250
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||||||    
T  30713206 ctcatttggttcatgaaccaagttcgacgaatcaattatcgaatc 30713250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 911 - 826
Alignment:
Q  322 tagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaat 407  Q
    ||||||||||||| ||||||||||||| ||  ||||||| ||   || | |  |||||||||||| ||||||||||||||||||||    
T  911 tagctcaagttcaactcatttatttaacgagcttaattttcaacccaaattcaactcatttggttcatgaaccaagttcaacgaat 826  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 43384843 - 43384888
Alignment:
Q  375 actcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    |||||||||||| ||||||||| |||||||||||||||| ||||||    
T  43384843 actcatttggttcatgaaccaacttcaacgaattaattatcgaatc 43384888  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 422
Target Start/End: Original strand, 22564059 - 22564102
Alignment:
Q  379 atttggtttatgaaccaagttcaacgaattaattaccgaatcaa 422  Q
    |||||||| |||||||||||||||||||  ||||||||||||||    
T  22564059 atttggttcatgaaccaagttcaacgaaacaattaccgaatcaa 22564102  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 422
Target Start/End: Complemental strand, 28492748 - 28492705
Alignment:
Q  379 atttggtttatgaaccaagttcaacgaattaattaccgaatcaa 422  Q
    |||||||| |||||||||||| |||||| |||||||||||||||    
T  28492748 atttggttcatgaaccaagtttaacgaactaattaccgaatcaa 28492705  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 1091775 - 1091821
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||| ||||||| ||||| |||||||||||||||||||| ||||||    
T  1091775 gactcgtttggttcatgaatcaagttcaacgaattaattatcgaatc 1091821  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 27189174 - 27189128
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 420  Q
    ||||||||||||| ||||||||||||| |||||| ||||| ||||||    
T  27189174 gactcatttggttcatgaaccaagttcgacgaatcaattatcgaatc 27189128  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 422
Target Start/End: Complemental strand, 33280067 - 33280021
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 422  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||||||||    
T  33280067 ctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcaa 33280021  T

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Target: scaffold0223 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 14477 - 14525
Alignment:
Q  377 tcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagtt 425  Q
    |||||||||| ||||||||||||||| |||| |||||||||||| ||||    
T  14477 tcatttggttcatgaaccaagttcaatgaatcaattaccgaatcgagtt 14525  T

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Target: scaffold0224 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 420
Target Start/End: Complemental strand, 7481 - 7354
Alignment:
Q  293 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaa 392  Q
    ||||||||| |||||||| || ||||  || | |||||||||||||| ||| |||  ||  ||||||| ||| |||   | | ||||||||||| |||||    
T  7481 ctcatgaaccaaacgagtcgacctatatatggttcaagttcagctcaattagttagcgaacttaattttcagctcaagttcggctcatttggttcatgaa 7382  T
Q  393 ccaagttcaacgaattaattaccgaatc 420  Q
    |||||||| |||||| ||||| ||||||    
T  7381 ccaagttcgacgaatcaattatcgaatc 7354  T

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Target: scaffold0260 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 11519 - 11565
Alignment:
Q  376 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 422  Q
    |||||||||| |||||| |||||||||||||||||||| ||| ||||    
T  11519 ctcatttggtatatgaatcaagttcaacgaattaattatcgagtcaa 11565  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 51394 - 51350
Alignment:
Q  374 gactcatttggtttatgaaccaagttcaacgaattaattaccgaa 418  Q
    ||||||||||||| | |||| ||||||||||||||| ||||||||    
T  51394 gactcatttggttcacgaactaagttcaacgaattatttaccgaa 51350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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