View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18421_low_1 (Length: 980)

Name: NF18421_low_1
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18421_low_1
NF18421_low_1
[»] chr3 (9 HSPs)
chr3 (277-970)||(3133272-3133956)
chr3 (273-440)||(3120932-3121099)
chr3 (130-275)||(3134205-3134349)
chr3 (273-418)||(3101558-3101703)
chr3 (20-91)||(3134341-3134412)
chr3 (288-412)||(3080078-3080202)
chr3 (294-397)||(4549233-4549336)
chr3 (273-412)||(3093939-3094078)
chr3 (800-875)||(3122276-3122351)
[»] chr8 (5 HSPs)
chr8 (282-412)||(15697868-15697998)
chr8 (671-772)||(12138169-12138270)
chr8 (282-356)||(15693511-15693585)
chr8 (273-412)||(15722895-15723034)
chr8 (707-769)||(1310131-1310193)
[»] chr7 (1 HSPs)
chr7 (670-769)||(5336505-5336604)
[»] chr5 (2 HSPs)
chr5 (725-768)||(40919293-40919336)
chr5 (732-769)||(18839169-18839206)


Alignment Details
Target: chr3 (Bit Score: 621; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 277 - 970
Target Start/End: Complemental strand, 3133956 - 3133272
Alignment:
Q  277 gtgttgaggaattcaagaatgaagtaatgttgattgccaaattgcaacatcggaaccttgtgagactgttggcttgctgcattgagcaaaatgagaagct 376  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3133956 gtgttgaggaattcaagaatgaggtaatgttgattgccaaattgcaacatcggaaccttgtgagactgttggcttgctgcattgagcaaaatgagaagct 3133857  T
Q  377 gcttatctatgaatacatgcccaattcaagccttgatttccagctacgcggtataactctcaaacattgaagcttcttatctagaaatctcattatgaag 476  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3133856 gcttatctatgaatgcatgcccaattcaagccttgatttccagctacgcggtataactctcaaacattgaagcttcttatctagaaatctcattatgaag 3133757  T
Q  477 ttagggtcccttatttaatataagaaagttgaatgcaaaattttaggttgaaactcttcaggattatgatgtctgcaacagcccttaagtctaaaatgag 576  Q
    ||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3133756 tt-----cccttatttaatataagaaagttgaatgcaaaattttaggttgaaactcttcaggattatgatgtctgcaacaacccttaagtctaaaatgag 3133662  T
Q  577 ttatactggtccaattttggtatcttttgggaacctaaatctttatgtgaaggttctgtaagttttgtccatcgcagatcgcgaaaagccactgtttgtt 676  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        
T  3133661 ttatactggtccaattttggtatcttttgggaacctaaatctttatgtgaaggttctgtaaattttgtccatcgcagatcgcgaaaagccactgtt---- 3133566  T
Q  677 caaattctaccatgctacagtgctatagtcccgctgtttcacaccattttgtacgaaatagtgtatcacgtaacaatagctatttgttcaaatcccatag 776  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  3133565 caaattctaccatgctacagtgctatagtcccgctgtttcacatcattttgtactaaatagtgtatcacgtaacaatagctatttgttcaaatcccacag 3133466  T
Q  777 gccacaacgctatagcaccactatttgtaccctagcccgttgttaagcattaaatctcacaatttagaactacgatgtcaagctggagttatacttcttc 876  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3133465 gccacaacgctatagcaccactatttgtaccctagcccgctgttaagcattaaatctcacaatttagaactacgatgtcaagctggagttatacttcttc 3133366  T
Q  877 gattgatctcattttacagcctagtaacttttgatagcttaaaactataggagaaagtttatggattccaaaccttctttattacctatgcttc 970  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3133365 gattgatctcattttacagcctagtaacttttgatagcttaaaactttaggagaaagtttatggattccaaaccttctttattacctatgcttc 3133272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 273 - 440
Target Start/End: Original strand, 3120932 - 3121099
Alignment:
Q  273 caaggtgttgaggaattcaagaatgaagtaatgttgattgccaaattgcaacatcggaaccttgtgagactgttggcttgctgcattgagcaaaatgaga 372  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| |    
T  3120932 caaggtgttgaggaattcaagaatgaagtaatgttgatagccaaattgcagcatcggaaccttgtgagactgttagctttctgcattgagcaaaatgaaa 3121031  T
Q  373 agctgcttatctatgaatacatgcccaattcaagccttgatttccagctacgcggtataactctcaaa 440  Q
    |||||||||||||||| |||||||| |||||||||||  ||||||||||||||||||| |||| ||||    
T  3121032 agctgcttatctatgagtacatgcctaattcaagcctcaatttccagctacgcggtatgactcccaaa 3121099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 130 - 275
Target Start/End: Complemental strand, 3134349 - 3134205
Alignment:
Q  130 taggtaattagtatgtgttgaatgaaaatgatgaaaatttcaactgaagatattcaaatcaaatcaaatagataatatgccaacgattgtcgattttgct 229  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3134349 taggtaatt-gtatgtgttgaataaaaatgatgaaaatttcaactgaagatattcaaatcaaatcaaatagataatatgccaacgattgtcgattttgct 3134251  T
Q  230 cttctctaaggcaaactcccgattttaacaaccttgcttaccacaa 275  Q
    | ||||| ||||||||||||||||||||||||||| ||||||||||    
T  3134250 catctctgaggcaaactcccgattttaacaaccttccttaccacaa 3134205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 273 - 418
Target Start/End: Original strand, 3101558 - 3101703
Alignment:
Q  273 caaggtgttgaggaattcaagaatgaagtaatgttgattgccaaattgcaacatcggaaccttgtgagactgttggcttgctgcattgagcaaaatgaga 372  Q
    |||||||| |||||||| || |||||| |||| ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||| |    
T  3101558 caaggtgtggaggaattaaaaaatgaaataatattgattgccaaattgcagcatcgaaaccttgtcagactattggcttgctgcatcgagcaaaatgaaa 3101657  T
Q  373 agctgcttatctatgaatacatgcccaattcaagccttgatttcca 418  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||    
T  3101658 agcttcttatctatgaatacttgcctaattcaagccttgatttcca 3101703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 3134412 - 3134341
Alignment:
Q  20 aaggattcaattagggttgtacaaaatcaagattcaaaaagaaaattgcgagaagaaagaatataggtaatt 91  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3134412 aaggattcaattagggttgtacaaaatcaagattgaaaaagaaaattgcgagaagaaagaatataggtaatt 3134341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 288 - 412
Target Start/End: Original strand, 3080078 - 3080202
Alignment:
Q  288 ttcaagaatgaagtaatgttgattgccaaattgcaacatcggaaccttgtgagactgttggcttgctgcattgagcaaaatgagaagctgcttatctatg 387  Q
    ||||||||||||||||| || ||||| |||||||||||| | |||||||||||||| |||| ||| ||||||||  | ||||| ||| ||||| | ||||    
T  3080078 ttcaagaatgaagtaatctttattgctaaattgcaacatagaaaccttgtgagacttttgggttgttgcattgaagataatgaaaagttgcttgtatatg 3080177  T
Q  388 aatacatgcccaattcaagccttga 412  Q
    |||||||||| || || ||||||||    
T  3080178 aatacatgccaaactctagccttga 3080202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 294 - 397
Target Start/End: Complemental strand, 4549336 - 4549233
Alignment:
Q  294 aatgaagtaatgttgattgccaaattgcaacatcggaaccttgtgagactgttggcttgctgcattgagcaaaatgagaagctgcttatctatgaataca 393  Q
    ||||||||||| || || || |||||||||||| |||||||||||||||| |||| ||| ||||||||| | ||||| ||| ||||| | ||||||||||    
T  4549336 aatgaagtaatctttatagctaaattgcaacataggaaccttgtgagactattgggttgttgcattgaggataatgaaaagttgcttctatatgaataca 4549237  T
Q  394 tgcc 397  Q
    ||||    
T  4549236 tgcc 4549233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 412
Target Start/End: Original strand, 3093939 - 3094078
Alignment:
Q  273 caaggtgttgaggaattcaagaatgaagtaatgttgattgccaaattgcaacatcggaaccttgtgagactgttggcttgctgcattgagcaaaatgaga 372  Q
    |||||| | ||||| ||||  ||||||||||| || || || ||||| |||||| | |||||||||||||| |||| ||| ||||||||| | ||||| |    
T  3093939 caaggtttggaggagttcacaaatgaagtaatctttatagctaaattacaacatagaaaccttgtgagacttttgggttgttgcattgaggataatgaaa 3094038  T
Q  373 agctgcttatctatgaatacatgcccaattcaagccttga 412  Q
    || ||||| | |||||||||||||| || || ||||||||    
T  3094039 agttgcttgtatatgaatacatgccaaactctagccttga 3094078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 800 - 875
Target Start/End: Original strand, 3122276 - 3122351
Alignment:
Q  800 tttgtaccctagcccgttgttaagcattaaatctcacaatttagaactacgatgtcaagctggagttatacttctt 875  Q
    |||||||  |||||| ||||||||||||||| |||||| ||  | |||| |||||| |||||||||||| ||||||    
T  3122276 tttgtacattagccccttgttaagcattaaaactcacacttatgcactatgatgtccagctggagttatgcttctt 3122351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 282 - 412
Target Start/End: Complemental strand, 15697998 - 15697868
Alignment:
Q  282 gaggaattcaagaatgaagtaatgttgattgccaaattgcaacatcggaaccttgtgagactgttggcttgctgcattgagcaaaatgagaagctgctta 381  Q
    ||||| ||||||||||||||||| || || || ||| |||||||  | ||||| |||||||| |||| ||||||||||||   |||||| ||| | ||      
T  15697998 gaggagttcaagaatgaagtaattttcatagctaaactgcaacacagaaacctcgtgagactcttgggttgctgcattgaaggaaatgaaaagatactag 15697899  T
Q  382 tctatgaatacatgcccaattcaagccttga 412  Q
    | |||||||||||||| ||||||||||||||    
T  15697898 tatatgaatacatgccgaattcaagccttga 15697868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 671 - 772
Target Start/End: Complemental strand, 12138270 - 12138169
Alignment:
Q  671 tttgttcaaattctaccatgctacagtgctatagtcccgctgtttcacaccattttgtacgaaatagtgtatcacgtaacaatagctatttgttcaaatc 770  Q
    ||||||||||||| || |||| || |||||||||| ||||| ||| |||||||||||||| ||||| ||||| | |  |||||||| ||||||||| |||    
T  12138270 tttgttcaaattccacaatgcaactgtgctatagtgccgcttttttacaccattttgtactaaatattgtattatgggacaatagcaatttgttcagatc 12138171  T
Q  771 cc 772  Q
    ||    
T  12138170 cc 12138169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 15693585 - 15693511
Alignment:
Q  282 gaggaattcaagaatgaagtaatgttgattgccaaattgcaacatcggaaccttgtgagactgttggcttgctgc 356  Q
    ||||| |||||||||||||||||||| || || |||||||||||||| |||||||| ||||| || || ||||||    
T  15693585 gaggagttcaagaatgaagtaatgtttatagcgaaattgcaacatcgcaaccttgtaagacttttagcatgctgc 15693511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 412
Target Start/End: Complemental strand, 15723034 - 15722895
Alignment:
Q  273 caaggtgttgaggaattcaagaatgaagtaatgttgattgccaaattgcaacatcggaaccttgtgagactgttggcttgctgcattgagcaaaatgaga 372  Q
    |||||| | ||||| || |||||||||||||| || || || |||||||||||  ||||||||||||  || || | ||||||||||||  ||||||| |    
T  15723034 caaggtttagaggagtttaagaatgaagtaatattcatagctaaattgcaacacaggaaccttgtgaagctattaggttgctgcattgaagaaaatgaaa 15722935  T
Q  373 agctgcttatctatgaatacatgcccaattcaagccttga 412  Q
    || |  |  | ||||| |||||||| |||||||| |||||    
T  15722934 agatattagtatatgagtacatgccaaattcaagtcttga 15722895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 707 - 769
Target Start/End: Complemental strand, 1310193 - 1310131
Alignment:
Q  707 ccgctgtttcacaccattttgtacgaaatagtgtatcacgtaacaatagctatttgttcaaat 769  Q
    ||||| |||||||  || |||||| ||||||||||||| | ||||||||| ||||||||||||    
T  1310193 ccgctatttcacaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaat 1310131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 769
Target Start/End: Complemental strand, 5336604 - 5336505
Alignment:
Q  670 gtttgttcaaattctaccatgctacagtgctatagtcccgctgtttcacaccattttgtacgaaatagtgtatcacgtaacaatagctatttgttcaaat 769  Q
    ||||||||||||||||| || ||| ||||||||||   |||| ||| ||| || ||||| | ||| ||||||||| | ||||||||  ||||||||||||    
T  5336604 gtttgttcaaattctactatactatagtgctatagcaacgctatttaacaacactttgtgctaaacagtgtatcatggaacaataggaatttgttcaaat 5336505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 768
Target Start/End: Complemental strand, 40919336 - 40919293
Alignment:
Q  725 ttgtacgaaatagtgtatcacgtaacaatagctatttgttcaaa 768  Q
    |||||||||||||||||||||| ||||||||  |||||||||||    
T  40919336 ttgtacgaaatagtgtatcacggaacaatagtgatttgttcaaa 40919293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 732 - 769
Target Start/End: Original strand, 18839169 - 18839206
Alignment:
Q  732 aaatagtgtatcacgtaacaatagctatttgttcaaat 769  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  18839169 aaatactgtatcacggaacaatagctatttgttcaaat 18839206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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