View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18421_low_12 (Length: 478)

Name: NF18421_low_12
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18421_low_12
NF18421_low_12
[»] chr7 (4 HSPs)
chr7 (14-463)||(7484073-7484522)
chr7 (14-460)||(7490827-7491273)
chr7 (82-460)||(7498616-7498994)
chr7 (14-61)||(7498572-7498619)
[»] chr3 (5 HSPs)
chr3 (26-120)||(3167625-3167719)
chr3 (26-107)||(3156572-3156653)
chr3 (334-402)||(2022901-2022969)
chr3 (26-120)||(3138840-3138934)
chr3 (334-460)||(3167291-3167417)
[»] chr8 (2 HSPs)
chr8 (26-114)||(23852496-23852587)
chr8 (341-402)||(23852235-23852296)
[»] chr5 (6 HSPs)
chr5 (49-120)||(1725228-1725299)
chr5 (216-282)||(1739238-1739304)
chr5 (147-210)||(1744827-1744890)
chr5 (26-120)||(1739583-1739677)
chr5 (216-282)||(1744581-1744647)
chr5 (70-136)||(1744739-1744805)


Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 14 - 463
Target Start/End: Original strand, 7484073 - 7484522
Alignment:
Q  14 gaacctgtggcagtagaagaatcaccaagttttagaatagcaccaattttattatttgtaccatctttaattcttgaagtacttgctccaccaaaaccta 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7484073 gaacttgtggcagtagaagaatcaccaagttttagaatagcaccaattttattatttgtaccatctttaattcttgaagtacttgctccaccaaaaccta 7484172  T
Q  114 gagttcctacaccagtattactagcctcaatattatttctcaaattaaaaagtgaaggctgtaatacatcattcaaacgcaaagcaccataaccatattt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7484173 gagttcctacaccagtattactagcctcaatattatttctcaaattaaaaagtgaagggtgtaatacatcattcaaacgcaaagcaccataaccatattt 7484272  T
Q  214 agaaccatttggggtaatcctagggttagtataaggtggtttttgaattgttgactccattctaacaccaaggcccctataattattataaggtatgaaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7484273 agaaccatttggggtaatcctagggttagtataaggtggtttttgaattgttgactccattctaacaccaaggcccctataattattataaggtataaaa 7484372  T
Q  314 gaagcactagaatcaatgatataaggtttaaagtgagattgccctaaacctaaagcaccaacattatacctttctttacgttgtttttccattgcacgtt 413  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7484373 gaagcactagaatcaatgatataaggtttaaggtgagattgccctaaacctaaagcaccaacattatacatttctttacgttgtttttccattgcacgtt 7484472  T
Q  414 ctgttttatgggcattttgatgccctcttaacccttgtaaagtagaatat 463  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7484473 ctgctttatgggcattttgatgccctcttaacccttgtaaagtagaatat 7484522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 460
Target Start/End: Original strand, 7490827 - 7491273
Alignment:
Q  14 gaacctgtggcagtagaagaatcaccaagttttagaatagcaccaattttattatttgtaccatctttaattcttgaagtacttgctccaccaaaaccta 113  Q
    |||| ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7490827 gaacttgtagcaatagaagaatctccaagttttagaatagcaccaattttattatttgtaccatcttcaattcttgaagtacttgctccaccaaaaccta 7490926  T
Q  114 gagttcctacaccagtattactagcctcaatattatttctcaaattaaaaagtgaaggctgtaatacatcattcaaacgcaaagcaccataaccatattt 213  Q
    |||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||| ||||| |  | |||||||||||||  |||||||||||||      
T  7490927 gagttcctactccagtattacttgcctcaatattatttctgaagttaaaaagtgaagggtgtaacatctgattcaaacgcaaactaccataaccatatcc 7491026  T
Q  214 agaaccatttggggtaatcctagggttagtataaggtggtttttgaattgttgactccattctaacaccaaggcccctataattattataaggtatgaaa 313  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||    
T  7491027 agaaccatttgggataaacctagggttagtataagttggtttttgaattgttgtctccattctaacaccaaggcccctataattattataaggtgtaaaa 7491126  T
Q  314 gaagcactagaatcaatgatataaggtttaaagtgagattgccctaaacctaaagcaccaacattatacctttctttacgttgtttttccattgcacgtt 413  Q
      || |||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||||    
T  7491127 agagtactagaataattgaaataaggtttaaagtgagattgccctaaacctaaagcaccagcatcatacctttctttacgttgtttttccaacgcacgtt 7491226  T
Q  414 ctgttttatgggcattttgatgccctcttaacccttgtaaagtagaa 460  Q
    | |  |||||||||||||||||||||| ||| ||||| |||||||||    
T  7491227 ccgccttatgggcattttgatgccctcctaagccttggaaagtagaa 7491273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 82 - 460
Target Start/End: Original strand, 7498616 - 7498994
Alignment:
Q  82 aattcttgaagtacttgctccaccaaaacctagagttcctacaccagtattactagcctcaatattatttctcaaattaaaaagtgaaggctgtaataca 181  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||||||| ||||| |      
T  7498616 aattcttgaagtacttgctccaccaaaacctagagttccaactccagtattactagcctcaatattatttctgaagttaaaaagtgaagggtgtaacatc 7498715  T
Q  182 tcattcaaacgcaaagcaccataaccatatttagaaccatttggggtaatcctagggttagtataaggtggtttttgaattgttgactccattctaacac 281  Q
    | |||||||||||||  |||||||||||||  ||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  7498716 tgattcaaacgcaaattaccataaccatatccagaaccagttgggataaacctagggttagtataagttggtttttgaattgttgtctccattctaacac 7498815  T
Q  282 caaggcccctataattattataaggtatgaaagaagcactagaatcaatgatataaggtttaaagtgagattgccctaaacctaaagcaccaacattata 381  Q
    |||||||||||||||||||||||||| | |||  || |||||||| | | | |||||||||||||||||||||||||||||||||||||||| ||| |||    
T  7498816 caaggcccctataattattataaggtgtaaaaagagtactagaataatttaaataaggtttaaagtgagattgccctaaacctaaagcaccagcatcata 7498915  T
Q  382 cctttctttacgttgtttttccattgcacgttctgttttatgggcattttgatgccctcttaacccttgtaaagtagaa 460  Q
    |||||||||  |||||||||||| |||||||||||  |||||||||||||||||||||| ||| ||||| |||||||||    
T  7498916 cctttcttttagttgtttttccaatgcacgttctgccttatgggcattttgatgccctcctaagccttggaaagtagaa 7498994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 7498572 - 7498619
Alignment:
Q  14 gaacctgtggcagtagaagaatcaccaagttttagaatagcaccaatt 61  Q
    |||| ||| ||| |||||||||| ||||||||||||||||||||||||    
T  7498572 gaacttgtagcaatagaagaatctccaagttttagaatagcaccaatt 7498619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 3167719 - 3167625
Alignment:
Q  26 gtagaagaatcaccaagttttagaatagcaccaattttattatttgtaccatctttaattcttgaagtacttgctccaccaaaacctagagttcc 120  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||||||||||  || |||||||||||||| ||||||| ||| ||| ||||    
T  3167719 gtagaagaatctcctaattttagaatagcaccaattttattatttgtaccatcttctatccttgaagtacttgcaccaccaataccaagaattcc 3167625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 3156572 - 3156653
Alignment:
Q  26 gtagaagaatcaccaagttttagaatagcaccaattttattatttgtaccatctttaattcttgaagtacttgctccaccaa 107  Q
    ||||||||||| || | ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||    
T  3156572 gtagaagaatctcctaattttagaatagcacctattttattatttgtaccatcttcaatccttgaagtacttgcaccaccaa 3156653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 402
Target Start/End: Complemental strand, 2022969 - 2022901
Alignment:
Q  334 ataaggtttaaagtgagattgccctaaacctaaagcaccaacattatacctttctttacgttgtttttc 402  Q
    |||||| |||||||||| |||||||||||| |||||||||   | |||||||| |||||||||||||||    
T  2022969 ataagggttaaagtgaggttgccctaaaccaaaagcaccactttcatacctttgtttacgttgtttttc 2022901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 3138840 - 3138934
Alignment:
Q  26 gtagaagaatcaccaagttttagaatagcaccaattttattatttgtaccatctttaattcttgaagtacttgctccaccaaaacctagagttcc 120  Q
    ||||||||||| || | || || |||||||||||||||||||| |||||||| ||  ||  |||||||| |||| ||||||| ||||||| ||||    
T  3138840 gtagaagaatctcccaattctaaaatagcaccaattttattatatgtaccatattcgatctttgaagtagttgcaccaccaatacctagatttcc 3138934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 460
Target Start/End: Complemental strand, 3167417 - 3167291
Alignment:
Q  334 ataaggtttaaagtgagattgccctaaacctaaagcaccaacattatacctttctttacgttgtttttccattgcacgttctgttttatgggcattttga 433  Q
    |||||| ||||||| || |||||||||||| ||| |||||   | |||| ||| ||||||||||||||| |  |||||||| |  ||||||||||| |||    
T  3167417 ataagggttaaagtaaggttgccctaaaccaaaaacaccattttcatacttttgtttacgttgtttttctaaggcacgttcagccttatgggcattctga 3167318  T
Q  434 tgccctcttaacccttgtaaagtagaa 460  Q
    || |||| |||| ||||| | ||||||    
T  3167317 tgtcctcctaacgcttgtgatgtagaa 3167291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 23852587 - 23852496
Alignment:
Q  26 gtagaagaatcaccaagttttagaatagcaccaattttattatt---tgtaccatctttaattcttgaagtacttgctccaccaaaacctag 114  Q
    ||||||||||| || | ||||| |||||||||||||||||||||   |||||||||||  |||||||||||| |||| || |||| ||||||    
T  23852587 gtagaagaatctcccaattttaaaatagcaccaattttattattatttgtaccatcttcgattcttgaagtagttgcaccgccaatacctag 23852496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 23852296 - 23852235
Alignment:
Q  341 ttaaagtgagattgccctaaacctaaagcaccaacattatacctttctttacgttgtttttc 402  Q
    ||||||| ||||||||||||||||||| ||||| ||| |||||||| ||| ||||| |||||    
T  23852296 ttaaagtaagattgccctaaacctaaaacaccatcatcatacctttgtttccgttgcttttc 23852235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 1725299 - 1725228
Alignment:
Q  49 aatagcaccaattttattatttgtaccatctttaattcttgaagtacttgctccaccaaaacctagagttcc 120  Q
    ||||||||||||||||||||||||  |||||| ||| ||||||||| || | ||||||| ||||||| ||||    
T  1725299 aatagcaccaattttattatttgtgtcatcttcaatccttgaagtagttccaccaccaatacctagaattcc 1725228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 1739304 - 1739238
Alignment:
Q  216 aaccatttggggtaatcctagggttagtataaggtggtttttgaattgttgactccattctaacacc 282  Q
    |||||| ||||| ||||||||||||| |||||| ||||||||||||  | || ||||||||||||||    
T  1739304 aaccatgtggggcaatcctagggttaatataagatggtttttgaatcatagattccattctaacacc 1739238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 1744890 - 1744827
Alignment:
Q  147 tatttctcaaattaaaaagtgaaggctgtaatacatcattcaaacgcaaagcaccataaccata 210  Q
    ||||||||||| ||||||||||||| | ||||| ||| |||||||  |||||||||| ||||||    
T  1744890 tatttctcaaactaaaaagtgaagggtttaatatatctttcaaacataaagcaccattaccata 1744827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 1739677 - 1739583
Alignment:
Q  26 gtagaagaatcaccaagttttagaatagcaccaattttattatttgtaccatctttaattcttgaagtacttgctccaccaaaacctagagttcc 120  Q
    ||||||||||| |||  ||||| |||||||||||| || | ||| |||||||||| ||| || |||| | |||| |||||||| |||||| ||||    
T  1739677 gtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatcctcgaagcagttgcaccaccaaatcctagaattcc 1739583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 1744647 - 1744581
Alignment:
Q  216 aaccatttggggtaatcctagggttagtataaggtggtttttgaattgttgactccattctaacacc 282  Q
    |||||| |||||||||||  |||||| |||||| ||||||||||||  | || ||||||||||||||    
T  1744647 aaccatgtggggtaatcccggggttaatataagatggtttttgaatcatagattccattctaacacc 1744581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 1744805 - 1744739
Alignment:
Q  70 tgtaccatctttaattcttgaagtacttgctccaccaaaacctagagttcctacaccagtattacta 136  Q
    ||||||||||| ||| ||||||||| |||| |||||||| |||||| ||||||| |||  |||||||    
T  1744805 tgtaccatcttcaatccttgaagtaattgcaccaccaaatcctagaattcctaccccacgattacta 1744739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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