View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18421_low_13 (Length: 474)
Name: NF18421_low_13
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Original strand, 25539996 - 25540457
Alignment:
| Q |
8 |
gagcagagaggggtacgacgagaggaacagcactagcgatatgacaaagaggtttgcggttagggtcataagccgaggaactgcataagcccaaattcat |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25539996 |
gagcaaagaggggtacgacgagaggaacagcactagcgatatgacaaagaggtttgcggttagggtcataagccgaggaactgcataagcccaaattcat |
25540095 |
T |
|
| Q |
108 |
aagcttgttaggagagcttatgacaaacaacttatgggagctcataagctcttgtgatactctcacccaaacagccctataaagtgcatataccaaaaga |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540096 |
aagcttgttaagagagcttatgacaaacaacttatgggagctcataagctcttgtgatactctcacccaaacagccctataaagtgcatataccaaaaga |
25540195 |
T |
|
| Q |
208 |
gcccacatacgcccaaaactagtcaatccaaataggcccttcatacaaaaagagtgcttataccaagagttcataagctgcactagctacaaatccgtta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540196 |
gcccacatacgcccaaaactagtcaatccaaataggcccttcatacaaaaagagtgcttataccaagagttcataagctgcactagctacaaatccgtta |
25540295 |
T |
|
| Q |
308 |
tatcaaaatcaaatgtaataacaaacaaccgtatta-------------tcgtaagcataaaatccttactgatattatagaaaaggagccaacatcata |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540296 |
tatcaaaatcaaatgtaataacaaacaaccgtattatatacattataactcgtaagcataaaatccttactgatattatagaaaaggagccaacatcata |
25540395 |
T |
|
| Q |
395 |
aaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaaaatatgagtaatc |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540396 |
aaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaaaatatgagtaatc |
25540457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 99 - 344
Target Start/End: Complemental strand, 25517494 - 25517261
Alignment:
| Q |
99 |
caaattcataagcttgttaggagagcttatgacaaacaacttatgggagctcataagctcttgtgatactctcacccaaacagccctataaagtgcatat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
25517494 |
caaattcataagcttgttaggagagcttatgacaaacaacttatgggagctcataagctcttgtgatactctcacccaaacacctctataaagtgcatat |
25517395 |
T |
|
| Q |
199 |
accaaaagagcccacatacgcccaaaactagtcaatccaaataggcccttcatacaaaaagagtgcttataccaagagttcataagctgcactagctaca |
298 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25517394 |
acca------------tacgcccaaaactagtcaatccaaataggcccttcatacaaaaagagtgcttataccaagagttcataagctgcactagctaca |
25517307 |
T |
|
| Q |
299 |
aatccgttatatcaaaatcaaatgtaataacaaacaaccgtattat |
344 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25517306 |
aatcctttatatcaaaatcaaatgtaataacaagcaaccgtattat |
25517261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 184 - 344
Target Start/End: Original strand, 25524598 - 25524762
Alignment:
| Q |
184 |
ctataaagtgcatataccaaaagagcccacatacgcccaaaactagtcaatccaaataggcccttcatacaaaaagag----tgcttataccaagagttc |
279 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||| ||||| |||||||||| |||| ||||||||| ||| ||| |
|
|
| T |
25524598 |
ctataaagtgcatataccaaaagagcccagatactcccaaaattagtaaatccaaagaggcctttcatacaaacagagtgcttgcttatacggagaattc |
25524697 |
T |
|
| Q |
280 |
ataagctgcactagctacaaatccgttatatcaaaatcaaatgtaataacaaacaaccgtattat |
344 |
Q |
| |
|
||||||| ||||||||||| ||| || ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
25524698 |
ataagctctactagctacaattcctttgtatcaaaatcaaatgtaataagaagcaaccgtattat |
25524762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 346 - 456
Target Start/End: Original strand, 25524812 - 25524922
Alignment:
| Q |
346 |
gtaagcataaaatccttactgatattatagaaaaggagccaacatcataaaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaaaa |
445 |
Q |
| |
|
|||| ||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
25524812 |
gtaaacatgaaatcgttgctgatattatagaaaaggagccaacatcagaaaaaacttaataaaccataaaatctgaaaattataggagcgaatggtaaat |
25524911 |
T |
|
| Q |
446 |
tatgagtaatc |
456 |
Q |
| |
|
||| ||||||| |
|
|
| T |
25524912 |
tattagtaatc |
25524922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 381 - 456
Target Start/End: Complemental strand, 25517251 - 25517176
Alignment:
| Q |
381 |
gagccaacatcataaaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaaaatatgagtaatc |
456 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25517251 |
gagccaacatcagaaaaaacttaataaaccataaaatttgaaaattgtaggagcgaatggtaaaatatgagtaatc |
25517176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 25517584 - 25517537
Alignment:
| Q |
5 |
gaggagcagagaggggtacgacgagaggaacagcactagcgatatgac |
52 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
25517584 |
gaggagcaaagaggggtatgaagagaggaacagcactagggatatgac |
25517537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 25537194 - 25537244
Alignment:
| Q |
273 |
agagttcataagctgcactagctacaaatccgttatatcaaaatcaaatgtaa |
325 |
Q |
| |
|
|||||||||||| |||||||||||| |||| | ||||||||||||||||||| |
|
|
| T |
25537194 |
agagttcataagatgcactagctac--atccttcatatcaaaatcaaatgtaa |
25537244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 27122733 - 27122674
Alignment:
| Q |
92 |
ataagcccaaattcataagcttgttaggagagcttatgacaaacaacttatgggagctca |
151 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
27122733 |
ataagcccaagtttataagcttgttaggggagcttatgaaaaacagcttatgggagctca |
27122674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 24024055 - 24023997
Alignment:
| Q |
102 |
attcataagcttgttaggagagcttatgacaaacaacttatgggagctcataagctctt |
160 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
24024055 |
attcataagcttattaggagagctcgttgaaaacagcttatgggagctcataagctctt |
24023997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University