View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_18 (Length: 406)
Name: NF18421_low_18
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 3086973 - 3087355
Alignment:
| Q |
18 |
atttgcatgtataggtaacagtgtaccataagcaaagaactcaaattttgtttccttttactcaacaactaattgacaacagtgtttcacatgacttcat |
117 |
Q |
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| T |
3086973 |
atttgcatgtataggtaacagtgtaccataagcaaagaactcaaattttgtttccttttactcaacaactaattgacaacagtgtttcacatgacttcat |
3087072 |
T |
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| Q |
118 |
tatatcattatcatgtctttgctgattgctaccttgtatataccagaatatgccatcttaatgttagttaaggtcaactaaactttgaagttaacttaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3087073 |
tatatcattatcatgtctttgctgattgctaccttgtatataccagaatatgccatcttaatgttagttaaggtcaactaaactttgaagttaacttaaa |
3087172 |
T |
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| Q |
218 |
cacattggtatttcaatcttgtactcaacattcatcaatgccccttaacgtgttctttcaccctaa-ttttgttataattgcctctataaatgttacgta |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
3087173 |
cacattggtatttcaatcttgtactcaacattcaacaatgccccttaacgtgttctttcaacctaatttttgttataattgcctctataaatgttacgta |
3087272 |
T |
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| Q |
317 |
cccttcacaaggaaacaaaattaaaacatatagtgtgattgaaaaatattagatatggcgagattgaaaggtttgatgatgtc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3087273 |
cccttcacaaggaaacaaaattaaaacatatagtgtgattgaaaaatattagatatggcgagattgaaaggtttgatgttgtc |
3087355 |
T |
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