View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18421_low_19 (Length: 406)

Name: NF18421_low_19
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18421_low_19
NF18421_low_19
[»] chr4 (2 HSPs)
chr4 (185-283)||(32289882-32289980)
chr4 (337-398)||(32289694-32289760)
[»] chr6 (1 HSPs)
chr6 (171-212)||(29694291-29694332)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 32289980 - 32289882
Alignment:
Q  185 tggttaaagctctaaaataagtaagtttagattaaatacaaataactactagtagtaaggtgtaatatactgccatcgatgatccatggcgaatatatt 283  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||| |||||||||||| ||| ||||||||| |||  |||||||||    
T  32289980 tggttaaagctctaaaataagtaagtttgcattaaatacaaataactactagcagtagggtgtaatataccgccttcgatgatctatgcagaatatatt 32289882  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 32289760 - 32289694
Alignment:
Q  337 tattgtgcatcatagcaaataaagaaggtaaacaa-----gtatgcaataagtctgatgttcatctc 398  Q
    |||||||||||||||||||||||||||||||||||     ||||||||||||||||||| |||||||    
T  32289760 tattgtgcatcatagcaaataaagaaggtaaacaagtactgtatgcaataagtctgatgctcatctc 32289694  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 29694291 - 29694332
Alignment:
Q  171 tgcccttaggtcattggttaaagctctaaaataagtaagttt 212  Q
    |||||||||| ||||||||||||  |||||||||||||||||    
T  29694291 tgcccttaggacattggttaaagtactaaaataagtaagttt 29694332  T

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