View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_22 (Length: 383)
Name: NF18421_low_22
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 50687097 - 50686747
Alignment:
| Q |
13 |
aatataacatagaagaggacgaatcaatatatattgaatcaacatcacaacaaaatcgaaaatcaaaactccgcatcaagatcaattcacgaacaactca |
112 |
Q |
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| T |
50687097 |
aatataacatagatgaagac-aatcaatatatattgaatcaacatcacagcaaaatcgaaaatcaaaactccgcatcaagatcaattcacgaacaactca |
50686999 |
T |
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| Q |
113 |
acaaacactaggcaattcttctttgctgaggggaaccaaatctgttgttaaaaaccacttaagtgagttgatcaactaaattgtctgatggtttattctt |
212 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50686998 |
acacacactaggcaattcttttttgctgaggggaaccaaatctgttgttaaaaaccacttaagtgagttgatcaactaaattgtttgatggtttattctt |
50686899 |
T |
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| Q |
213 |
tgaaaaatgtacgcaaatccttccatttgtgaggttacccaagcaaaaactcccacttgagaaactgaccgtatcgcgagcaaaacactcattgctgaga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50686898 |
tgaaaaatgtacgcaaatccttccatttgtgaggttacccaagcaaaaactcccacttgagaaactgaccgtatcgcgagcaaaacactcattgctgaga |
50686799 |
T |
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| Q |
313 |
tatttccacaagaccgcgtgtcttctcaatagagtgtgatatggttgtcctt |
364 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50686798 |
tatttccacaacaccgcgtgtcttctcaatagagtgtgatatggttgtcctt |
50686747 |
T |
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