View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_26 (Length: 381)
Name: NF18421_low_26
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 32603171 - 32603545
Alignment:
| Q |
1 |
tctctcttctacagacaccagcaccacatttacacttaggatacttaaccaaagaaggctccaaatccctttcatcatcgcaccacttcacaaaggtacc |
100 |
Q |
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| T |
32603171 |
tctctcttttacagacaccagcaccacatttacacttaggatacttaaccaaagaaggctccaaatccctttcatcatcgcaccacttcacaaaggtacc |
32603270 |
T |
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| Q |
101 |
acaaggtgcaccctagaaacaaaaacacatagtaaacaaaacttggtagtaatcactaaaaatacaatctttaaggtgttagtaacatacccttttgata |
200 |
Q |
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| T |
32603271 |
acaaggtgcaccctagaaacaaaaacacacagtaaacaaaacttggtagtaatcactaaaaatacaatctttaaggtgttagtaacatacccttttgata |
32603370 |
T |
|
| Q |
201 |
ggacaagcaaagtacaacctccctttgtttctttcactattagagattttaacatcacaaaaaccgtgaccgcaacgacagtgtgtttgcttgttggaag |
300 |
Q |
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| T |
32603371 |
ggacaagcaaagtacaacctccctttgtttctttcactattagagattttaacatcacaaaaaccgtgaccgcaacgacagtgtatttgcttgttggaag |
32603470 |
T |
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| Q |
301 |
acaaaaccggtgaatggttattgttgttgttaggacaatacatggaccagtgaccttgttgtttacatttgaagc |
375 |
Q |
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| T |
32603471 |
acaaaaccggtgaatggttattgttgttgttaggacaatacatggaccagtgaccttgttgtttacatttgaagc |
32603545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 32598881 - 32598924
Alignment:
| Q |
288 |
tgcttgttggaagacaaaaccggtgaatggttattgttgttgtt |
331 |
Q |
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| T |
32598881 |
tgcttgtcggaagacaaaaccggtgaatggttgttgttcttgtt |
32598924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 25 - 375
Target Start/End: Original strand, 31905965 - 31906314
Alignment:
| Q |
25 |
cacatttacacttaggatacttaaccaaagaaggctccaaatccctttcatcatcgcaccacttcacaaaggtaccacaaggtgcaccctagaaacaaaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||| |||||||| |
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| T |
31905965 |
cacatttacacttaggatacttaaccaaagaaggctccaaatccctctcatcatcacaccacttcacaaaagtactacaaggtgcaccctgaaaacaaaa |
31906064 |
T |
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| Q |
125 |
acacatagtaaacaaaacttggtagtaatcactaaaaatacaatctttaaggtgttagtaacatacccttttgataggacaagcaaagtacaacctccct |
224 |
Q |
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| T |
31906065 |
acacacagtaaacaaagattgaaa-taatcactaaaaatacaaacttgaaggtgttagtaacatacccttttgataggacatgcaaagtacaacctccct |
31906163 |
T |
|
| Q |
225 |
ttgtttctttcactattagagattttaacatcacaaaaaccgtgaccgcaacgacagtgtgtttgcttgttggaagacaaaaccggtgaatggttattgt |
324 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31906164 |
ttgtttctttcactattagagattttaacatcacagaaaccgtgaccgcaacgacagtgtatttgcttgttggaagacaaaaccggtgaatggttattgt |
31906263 |
T |
|
| Q |
325 |
tgttgttaggacaatacatggaccagtgaccttgttgtttacatttgaagc |
375 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31906264 |
tgttgttaggacaatacatagaccagtgaccttgttgtttacatttgaagc |
31906314 |
T |
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