View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_33 (Length: 329)
Name: NF18421_low_33
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 39 - 305
Target Start/End: Complemental strand, 34132035 - 34131761
Alignment:
| Q |
39 |
gttgatagtaaataattatgtccagtagttaggacttgggaatttgttgcaattgatctctataaatatgacagttatgtatgaattagatagaagttaa |
138 |
Q |
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| T |
34132035 |
gttgatagtaaataattatgtccagtagttaggacttaggaatttgttgcaattgatctctataaatatgacagttatgtatgaattagatagaagttaa |
34131936 |
T |
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| Q |
139 |
cagattggacgttatagacccaaaatttgttcataagtggtgagtatccgacaccgtctaagttgaa--------tttgagttagacccaatctaaattt |
230 |
Q |
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| T |
34131935 |
cagattggacgtgatagacccaaaatttgttcataagtggtgagtattcaacaccgtctaagttgaatttgtggatttgagttagactcaatctaaattt |
34131836 |
T |
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| Q |
231 |
tatgataatgtgagagtctaccttaaatactttggatcattctttattattacttatttggtcatgtttggatct |
305 |
Q |
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| T |
34131835 |
tatgataatgtgagagtctaccttaaatactttggatcattctttgttattacttatttggtcatgtttggatct |
34131761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 34133180 - 34133152
Alignment:
| Q |
18 |
gaaagtctcatgttgggttgtgttgatag |
46 |
Q |
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| T |
34133180 |
gaaagtctcatgttgggttgtgttgatag |
34133152 |
T |
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