View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_34 (Length: 327)
Name: NF18421_low_34
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 24419076 - 24419399
Alignment:
| Q |
1 |
taatatgaccactattatctgtgtcgatcatcttaaacatttctttcaatccagcaatttcttcttcagatagattctctgcaataacctgcacagaaca |
100 |
Q |
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| T |
24419076 |
taatatgaccactattatctgtgtcgatcatcttaaacatttctttcaatccagcaatttcttcttcagatagattctctgcaataacctacacagaaca |
24419175 |
T |
|
| Q |
101 |
acataaaaatttacaagagcaaaatttgacaatcaaagtagatgctatacaataagttgacatattcggtatcaat-cctaaatagagggaatataaata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
24419176 |
gcataaaaatttacaagagcaaaatttgacaatcaaagtagatcctatacaataagttgacatattcgttatcaatccctaaatagagggaatataaata |
24419275 |
T |
|
| Q |
200 |
ctcaggtgtgactgagttatctgacgggaaaagtaacttactctaagtgccattttcttgagcttgttcattgcagtaaactgcttcatgcgactcaaaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24419276 |
ctcaggtgtgactgagttatctgacgggaaaagtaacttactctaagtgccattttcttgagcttgttcattgcagtaaactgcttcatgcgactcaaaa |
24419375 |
T |
|
| Q |
300 |
ctgcagaatctagaggcttgtctg |
323 |
Q |
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|||||||||||||||||||||||| |
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| T |
24419376 |
ctgcagaatctagaggcttgtctg |
24419399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 18402212 - 18402130
Alignment:
| Q |
9 |
ccactattatctgtgtcgatcatcttaaacatttctttcaatccagcaatttcttcttcagatagattctctgcaataacctg |
91 |
Q |
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| T |
18402212 |
ccactgttatctgtatctatcatcttgaacatttcttttaatccagccaattcttcttcagataagctctctgcaatgacctg |
18402130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 18402004 - 18401952
Alignment:
| Q |
235 |
acttactctaagtgccattttcttgagcttgttcattgcagtaaactgcttca |
287 |
Q |
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||||||| |||| ||||||||||||||||||||||| |||| ||| ||||||| |
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| T |
18402004 |
acttactataagagccattttcttgagcttgttcatagcagaaaattgcttca |
18401952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 18429644 - 18429599
Alignment:
| Q |
27 |
atcatcttaaacatttctttcaatccagcaatttcttcttcagata |
72 |
Q |
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| T |
18429644 |
atcatcttgaacatttcttttaatccagctaattcttcttcagata |
18429599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 43455189 - 43455105
Alignment:
| Q |
239 |
actctaagtgccattttcttgagcttgttcattgcagtaaactgcttcatgcgactcaaaactgcagaatctagaggcttgtctg |
323 |
Q |
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|||||||| ||||||||||||||||||||||| |||| ||| ||||| | ||||||||| ||||||||| |||||| |||||| |
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| T |
43455189 |
actctaagagccattttcttgagcttgttcatagcagaaaattgctttagacgactcaaagttgcagaatcaagaggcctgtctg |
43455105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 43455439 - 43455349
Alignment:
| Q |
1 |
taatatgaccactattatctgtgtcgatcatcttaaacatttctttcaatccagcaatttcttcttcagatagattctctgcaataacctg |
91 |
Q |
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|||| |||||| |||| ||||| || ||| |||||||| ||||||||| |||| ||||||||||||||| ||||| | ||| |||||||| |
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| T |
43455439 |
taatttgaccagtattgtctgtatctatcgtcttaaacgattctttcaacccagaaatttcttcttcagaaagattttttgcgataacctg |
43455349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 2481650 - 2481590
Alignment:
| Q |
33 |
ttaaacatttctttcaatccagcaatttcttcttcagatagattctctgcaataacctgca |
93 |
Q |
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||||||||||| ||||| || ||||||||||||||| ||||| || ||||||||||||| |
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| T |
2481650 |
ttaaacatttccttcaagcctataatttcttcttcagaaagattttcagcaataacctgca |
2481590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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