View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18421_low_36 (Length: 321)

Name: NF18421_low_36
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18421_low_36
NF18421_low_36
[»] chr1 (6 HSPs)
chr1 (23-309)||(3404070-3404356)
chr1 (23-309)||(3442463-3442749)
chr1 (156-292)||(8262364-8262500)
chr1 (156-247)||(18833830-18833921)
chr1 (157-235)||(11384929-11385007)
chr1 (156-292)||(24888436-24888572)
[»] chr6 (2 HSPs)
chr6 (156-292)||(6891078-6891214)
chr6 (188-292)||(15879840-15879944)
[»] chr4 (7 HSPs)
chr4 (156-292)||(13920070-13920206)
chr4 (156-292)||(6561090-6561226)
chr4 (151-240)||(43119764-43119853)
chr4 (156-292)||(34940862-34940998)
chr4 (156-292)||(36697872-36698008)
chr4 (156-247)||(1026308-1026399)
chr4 (154-238)||(32125667-32125751)
[»] scaffold0216 (1 HSPs)
scaffold0216 (156-247)||(29052-29143)
[»] scaffold0578 (1 HSPs)
scaffold0578 (189-290)||(2566-2667)
[»] chr2 (3 HSPs)
chr2 (189-290)||(5009010-5009111)
chr2 (156-290)||(16383774-16383908)
chr2 (156-292)||(12540750-12540886)
[»] chr8 (4 HSPs)
chr8 (156-290)||(9015092-9015226)
chr8 (156-242)||(36129794-36129880)
chr8 (154-242)||(5895033-5895121)
chr8 (156-292)||(12735620-12735756)
[»] chr7 (2 HSPs)
chr7 (156-214)||(45916812-45916870)
chr7 (156-242)||(18273132-18273218)
[»] chr5 (3 HSPs)
chr5 (156-290)||(22093636-22093770)
chr5 (156-247)||(13313094-13313185)
chr5 (168-224)||(27242892-27242948)
[»] chr3 (3 HSPs)
chr3 (156-292)||(38140730-38140866)
chr3 (156-247)||(37052242-37052333)
chr3 (156-242)||(48191267-48191353)
[»] scaffold0284 (1 HSPs)
scaffold0284 (156-247)||(6308-6399)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 309
Target Start/End: Original strand, 3404070 - 3404356
Alignment:
Q  23 gagggctgtggataaggccacctgattttcctcatgttggggttcgatttcaatttatgttgaggatagtaaagttgtggctaagccttagggatcctca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3404070 gagggctgtggataaggccacctgattttcctcatgttggggttcgatttcaatttatgttgaggatagtaaagttgtggctaagccttagggatcctca 3404169  T
Q  123 ttgcgtagttcattagatatttgttcaaggatatgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtt 222  Q
    || |||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3404170 ttacgtagttcattatatatttgttcaagaatgtgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtt 3404269  T
Q  223 tgtctcaagttttaaaaattagttcattggaatgttatattctcgaaaatgttatttacacatgatttctcctcacacatgtatttt 309  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3404270 tgtttcaagttttaaaaattagttcattggaatgttatattcccgaaaatgttatttacacatgatttctcctcacacatgtatttt 3404356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 3442749 - 3442463
Alignment:
Q  23 gagggctgtggataaggccacctgattttcctcatgttggggttcgatttcaatttatgttgaggatagtaaagttgtggctaagccttagggatcctca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3442749 gagggctgtggataaggccacctgattttcctcatgttggggttcgatttcaatttatgttgaggatagtaaagttgtggctaagccttagggatcctca 3442650  T
Q  123 ttgcgtagttcattagatatttgttcaaggatatgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtt 222  Q
    || |||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3442649 ttacgtagttcattatatatttgttcaagaatgtgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtt 3442550  T
Q  223 tgtctcaagttttaaaaattagttcattggaatgttatattctcgaaaatgttatttacacatgatttctcctcacacatgtatttt 309  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3442549 tgtttcaagttttaaaaattagttcattggaatgttatattcccgaaaatgttatttacacatgatttctcctcacacatgtatttt 3442463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 292
Target Start/End: Original strand, 8262364 - 8262500
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    ||||||||| |||||||||||||| |||   |  ||||||||||  |||||||||||||   |||||||| | |||||||||||||| |||| | |||||    
T  8262364 tgtttgtttcaaggtttgtaatatgattcccgaaaatgtgagattagaaatgcaacattcacatgtttgttttaagttttaaaaatttgttcctaggaat 8262463  T
Q  256 gttatattctcgaaaatgttatttacacatgatttct 292  Q
    ||||||||| |   |||||||| ||||| ||||||||    
T  8262464 gttatattcccatgaatgttatctacacgtgatttct 8262500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 18833921 - 18833830
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttc 247  Q
    ||||||||| |||||||||||||| ||| | |||||||||| ||  |||||||||||||   |||||||| ||||||||| |||||| ||||    
T  18833921 tgtttgtttcaaggtttgtaatatgattatcgggaatgtgaaatttgaaatgcaacattctcatgtttgtttcaagttttgaaaatttgttc 18833830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 11385007 - 11384929
Alignment:
Q  157 gtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagtttt 235  Q
    |||||||| |||||||||||||| |||   || |||||||||| |||||||||||||| | |||||||| |||||||||    
T  11385007 gtttgtttcaaggtttgtaatatgattcccggaaatgtgagattggaaatgcaacattccaatgtttgtttcaagtttt 11384929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 292
Target Start/End: Complemental strand, 24888572 - 24888436
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    |||||||||  | ||||||||||| ||| | |||||||||| || |||||||||  ||    |||||||| | ||||||| |||||| ||||   |||||    
T  24888572 tgtttgtttcgatgtttgtaatatgattctcgggaatgtgaaattggaaatgcagtatactcatgtttgttttaagttttgaaaatttgttccgaggaat 24888473  T
Q  256 gttatattctcgaaaatgttatttacacatgatttct 292  Q
    |||||||||||   ||| |||||||||||||||||||    
T  24888472 gttatattctcatgaattttatttacacatgatttct 24888436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 292
Target Start/End: Original strand, 6891078 - 6891214
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    |||||||||||||||||||||||| |||   ||||| || |||| |||||||||||||| |||||||||| ||||||||| | ||||  ||| | | |||    
T  6891078 tgtttgttttaaggtttgtaatatgattcccgggaacgtaagattggaaatgcaacattcctatgtttgtttcaagttttgataatttattcttagaaat 6891177  T
Q  256 gttatattctcgaaaatgttatttacacatgatttct 292  Q
    ||||||||| |   ||||||||||| |||||||||||    
T  6891178 gttatattcccatgaatgttatttatacatgatttct 6891214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 292
Target Start/End: Original strand, 15879840 - 15879944
Alignment:
Q  188 ggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaatgttatattctcgaaaatgttatttacacatga 287  Q
    ||||||||||||  ||||||||||||| | |||||||| ||||||||| |||||| ||||    ||||||||||||||| |||||||||||||||||||     
T  15879840 ggaatgtgagattagaaatgcaacattcccatgtttgtttcaagttttgaaaatttgttcccatgaatgttatattctcaaaaatgttatttacacatgt 15879939  T
Q  288 tttct 292  Q
    |||||    
T  15879940 tttct 15879944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 292
Target Start/End: Original strand, 13920070 - 13920206
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    ||||| ||| ||| |||||||||| |||| | ||||||||||||  |||||||||||||   |||||||| ||||||||| |||||| |||     ||||    
T  13920070 tgtttatttgaagatttgtaatatgatttgtaggaatgtgagattagaaatgcaacattctcatgtttgtttcaagttttgaaaatttgttaccatgaat 13920169  T
Q  256 gttatattctcgaaaatgttatttacacatgatttct 292  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  13920170 gttatattctcaaaaatgttatttacacatgttttct 13920206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 292
Target Start/End: Original strand, 6561090 - 6561226
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    ||||||||| |||||||||||||| |||   |||||||||| || |||||||||||||| | |||||||| ||||||||| |||||| ||||    ||||    
T  6561090 tgtttgtttcaaggtttgtaatatgattcccgggaatgtgacattggaaatgcaacattcccatgtttgtttcaagttttgaaaatttgttcccatgaat 6561189  T
Q  256 gttatattctcgaaaatgttatttacacatgatttct 292  Q
    ||||||||| |   |||||||||| ||||| ||||||    
T  6561190 gttatattcccaggaatgttatttgcacataatttct 6561226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 43119764 - 43119853
Alignment:
Q  151 ggatatgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaa 240  Q
    |||||||||||||| ||||||| |||||| |||||||| |||||||||| ||||||||||||||   |||||||| | ||||||| ||||    
T  43119764 ggatatgtttgtttcaaggtttataatatgatttttggtaatgtgagattggaaatgcaacattctcatgtttgttttaagttttgaaaa 43119853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 292
Target Start/End: Original strand, 34940862 - 34940998
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    ||||||||| |||||||||||||| |||   ||||| ||||||| | ||||| |||||||  |||||||| |||||||||||||||| ||||     |||    
T  34940862 tgtttgtttcaaggtttgtaatatgattgccgggaacgtgagattgaaaatgtaacattttcatgtttgtttcaagttttaaaaatttgttcccaacaat 34940961  T
Q  256 gttatattctcgaaaatgttatttacacatgatttct 292  Q
     |||||||  |  ||||||||||||||||||||||||    
T  34940962 attatatttccagaaatgttatttacacatgatttct 34940998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 292
Target Start/End: Original strand, 36697872 - 36698008
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    ||||||||| ||| |||||||||| |||   |||||||||| || ||||||||||||||   |||||||| ||||||||| |||||| ||||    ||||    
T  36697872 tgtttgtttcaagatttgtaatatgattcccgggaatgtgacattggaaatgcaacattctcatgtttgtttcaagttttgaaaatttgttctcatgaat 36697971  T
Q  256 gttatattctcgaaaatgttatttacacatgatttct 292  Q
    ||||||||| |   |||||||||| ||||| ||||||    
T  36697972 gttatattcccaggaatgttatttgcacataatttct 36698008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 1026399 - 1026308
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttc 247  Q
    ||||||||| ||  ||| |||||||||| | | |||| |||||| ||||||||||||||   |||||||| |||||||||||||||| ||||    
T  1026399 tgtttgtttcaaaatttataatataattatcgcgaatatgagattggaaatgcaacattctcatgtttgtttcaagttttaaaaatttgttc 1026308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 32125667 - 32125751
Alignment:
Q  154 tatgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaa 238  Q
    |||||||||||||  |||| || | | ||||||| |||||||||||   |||||||| ||||  |||||||| ||||||||||||    
T  32125667 tatgtttgttttattgtttctatttttatttttgtgaatgtgagattttaaatgcaatattttaatgtttgtttcaagttttaaa 32125751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 29143 - 29052
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttc 247  Q
    ||||||||| |||||||||||||| ||| | |||||||||| || |||||||||||||| | |||||||| |||||||||||||||| ||||    
T  29143 tgtttgtttcaaggtttgtaatatgattctcgggaatgtgacattggaaatgcaacattcccatgtttgtttcaagttttaaaaatttgttc 29052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 2566 - 2667
Alignment:
Q  189 gaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaatgttatattctcgaaaatgttatttacacatgat 288  Q
    ||||||||||| ||||||| |||||||| |||||||| ||||||||| |||||| ||||   |||||||||||||| |   |||||||||||||||||||    
T  2566 gaatgtgagattggaaatgtaacatttccatgtttgtttcaagttttgaaaatttgttccgaggaatgttatattcacaggaatgttatttacacatgat 2665  T
Q  289 tt 290  Q
    ||    
T  2666 tt 2667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 290
Target Start/End: Complemental strand, 5009111 - 5009010
Alignment:
Q  189 gaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaatgttatattctcgaaaatgttatttacacatgat 288  Q
    ||||||||||| ||||||| |||||||| |||||||| ||||||||| |||||| ||||   |||||||||||||| |   |||||||||||||||||||    
T  5009111 gaatgtgagattggaaatgtaacatttccatgtttgtttcaagttttgaaaatttgttccgaggaatgttatattcacaggaatgttatttacacatgat 5009012  T
Q  289 tt 290  Q
    ||    
T  5009011 tt 5009010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 290
Target Start/End: Original strand, 16383774 - 16383908
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    ||||||||| || ||||||||||| |||  |||||||||||||| | ||||||||||||   ||||| || ||||||||| ||| || ||||   |||||    
T  16383774 tgtttgtttcaatgtttgtaatatgattcatgggaatgtgagatagaaaatgcaacattctcatgttagtttcaagttttgaaagtttgttccccggaat 16383873  T
Q  256 gttatattctcgaaaatgttatttacacatgattt 290  Q
     |||||||  | |||||| ||||||||| ||||||    
T  16383874 tttatatttccaaaaatgctatttacacgtgattt 16383908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 292
Target Start/End: Original strand, 12540750 - 12540886
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    ||||||||| |||||||||||||| |||   |  |||||||||| |||||| |||||||   |||||||| |  |||||| |||||| ||||     |||    
T  12540750 tgtttgtttcaaggtttgtaatatgattccagaaaatgtgagattggaaatacaacattctcatgtttgttttcagttttgaaaatttgttccaataaat 12540849  T
Q  256 gttatattctcgaaaatgttatttacacatgatttct 292  Q
     |||||||| | | |||| ||||||||||||||||||    
T  12540850 cttatattcccaagaatgatatttacacatgatttct 12540886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 290
Target Start/End: Original strand, 9015092 - 9015226
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    ||||||||| |||||||||||||| |||  |||||||||||||| |||||||||  |||   |||||||| | ||||||| |||||| |||   || |||    
T  9015092 tgtttgtttcaaggtttgtaatatgattcatgggaatgtgagattggaaatgcattattctgatgtttgttttaagttttgaaaatttgtttcctgaaat 9015191  T
Q  256 gttatattctcgaaaatgttatttacacatgattt 290  Q
    ||||||||| |   |||||||||||||||||||||    
T  9015192 gttatattcccatgaatgttatttacacatgattt 9015226  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 36129880 - 36129794
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaatt 242  Q
    ||||||||| ||| ||| |||||| ||||  ||||||||||||| |||||||||||||| |||| ||||| ||| ||||| ||||||    
T  36129880 tgtttgtttcaagatttataatatgatttccgggaatgtgagattggaaatgcaacattcctatctttgtttcatgttttgaaaatt 36129794  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 5895121 - 5895033
Alignment:
Q  154 tatgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaatt 242  Q
    |||| |||||| ||| ||| |||||| ||| | | ||||||||||| |||||||||||||| |||| ||||| ||||||||| ||||||    
T  5895121 tatgcttgtttcaagatttctaatatgattctcgagaatgtgagattggaaatgcaacattcctatatttgtttcaagttttgaaaatt 5895033  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 292
Target Start/End: Original strand, 12735620 - 12735756
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    ||||| ||| ||| |||||||||| |||||  |||||||| ||| | ||||||||||||   ||||| ||  |||||||| |||||| |||| |   |||    
T  12735620 tgtttatttcaagatttgtaatatgattttcaggaatgtgtgattgtaaatgcaacattctcatgttagttacaagttttgaaaatttgttcctacaaat 12735719  T
Q  256 gttatattctcgaaaatgttatttacacatgatttct 292  Q
    ||||||||  |  |||| |||||||||||||||||||    
T  12735720 gttatatttccataaatattatttacacatgatttct 12735756  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 45916870 - 45916812
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatt 214  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  45916870 tgtttgtttcaaggtttgtaatatgattttcgggaatgtgagattggaaatgcaacatt 45916812  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 18273218 - 18273132
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaatt 242  Q
    ||||| ||| |||||||||||||| ||| || ||||||||||||  ||||||| |||||   |||||||| ||| ||||| ||||||    
T  18273218 tgtttatttcaaggtttgtaatatgattcttaggaatgtgagattagaaatgctacattctcatgtttgtttcatgttttgaaaatt 18273132  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 290
Target Start/End: Original strand, 22093636 - 22093770
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    ||||||||| |||||||||||||| |||   ||||||||||||| | |||| ||| ||||| |||||| | ||||||||| |||||| ||||    ||||    
T  22093636 tgtttgtttcaaggtttgtaatattattcccgggaatgtgagattgaaaatacaatatttccatgtttttttcaagttttgaaaatttgttcccatgaat 22093735  T
Q  256 gttatattctcgaaaatgttatttacacatgattt 290  Q
    |||||||||||   |||||| |||| |||||||||    
T  22093736 gttatattctcaggaatgttgtttaaacatgattt 22093770  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 13313185 - 13313094
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttc 247  Q
    ||||||||| ||||||| |||||| |||   || |||||||||| ||||||||||||||   |||||||| ||||||||| |||||| ||||    
T  13313185 tgtttgtttcaaggtttataatatgattcccggaaatgtgagattggaaatgcaacattctcatgtttgtttcaagttttgaaaatttgttc 13313094  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 27242948 - 27242892
Alignment:
Q  168 ggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttg 224  Q
    |||||||||||||||||| |||||| ||| || | |||||||| |||||||||||||    
T  27242948 ggtttgtaatataattttcgggaatatgaaattgaaaatgcaatatttctatgtttg 27242892  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 292
Target Start/End: Complemental strand, 38140866 - 38140730
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttcattggaat 255  Q
    ||||| ||| ||| |||||||||| ||||  ||||||||| ||| |||||||||| ||||   ||||||| |||| |||| |||||| ||||   |||||    
T  38140866 tgtttatttcaagatttgtaatatgatttccgggaatgtgtgattggaaatgcaatattttcctgtttgtttcaaattttgaaaatttgttctaaggaat 38140767  T
Q  256 gttatattctcgaaaatgttatttacacatgatttct 292  Q
    ||||||||||    ||| |||||||||||||||||||    
T  38140766 gttatattcttatgaatcttatttacacatgatttct 38140730  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 37052333 - 37052242
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttc 247  Q
    ||||||||| |||| ||||||||| |||   ||||||||||||| |||||||||||||| |  || |||| |||| |||| |||||| ||||    
T  37052333 tgtttgtttcaagggttgtaatatgattcccgggaatgtgagattggaaatgcaacattcccgtgcttgtttcaaattttgaaaatttgttc 37052242  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 48191267 - 48191353
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaatt 242  Q
    ||||||||| ||||||| |||| | |||| ||| ||| |||||| || |||||||||||   |||||||| ||||||||| ||||||    
T  48191267 tgtttgtttcaaggtttataatgtgatttctggaaatttgagattggtaatgcaacattctcatgtttgtttcaagttttgaaaatt 48191353  T

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Target: scaffold0284 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 6399 - 6308
Alignment:
Q  156 tgtttgttttaaggtttgtaatataatttttgggaatgtgagatcggaaatgcaacatttctatgtttgtctcaagttttaaaaattagttc 247  Q
    ||||||||| |||||||||||||| |||   |||||||||| || ||||||||||||||   |||||||| ||||||||| |||||| ||||    
T  6399 tgtttgtttcaaggtttgtaatatgattcccgggaatgtgacattggaaatgcaacattctcatgtttgtttcaagttttgaaaatttgttc 6308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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