View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_39 (Length: 309)
Name: NF18421_low_39
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 39315344 - 39315055
Alignment:
| Q |
1 |
ttttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttgcagtgctaacctcactggtgctcttggcaatggccctcattgtgacccaa |
100 |
Q |
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| T |
39315344 |
ttttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttgcagtgctaacctcactggtgctcttggcaatggccctcattgtgacccaa |
39315245 |
T |
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| Q |
101 |
tctctatcactattctccttcaagatcaagttggaggtcttgaagtttttgctgacaacaaatggcttgctgtgcccccaaagcctgatacctttgtcat |
200 |
Q |
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| T |
39315244 |
tctctatcactattctccttcaagatcaagttggaggtcttgaagtttttgctgacaacaaatggcttgctgtgcccccaaagcctgatacctttgtcat |
39315145 |
T |
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| Q |
201 |
caacataggtgacactttcatggtaagtaaatggtaaaatgatactagtgtgtttcttagcacacaacaaaacatgttaaatatgtttta |
290 |
Q |
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| T |
39315144 |
caacataggtgacaccttcatggtaagtaaatggtaaaatgatactagtgtgtttcttagcacgcaacaaaacatgttaaatatgtttta |
39315055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 39306352 - 39306184
Alignment:
| Q |
1 |
ttttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttgcagtgctaacctcactggtgctcttggcaatggccctcattgtgacccaa |
100 |
Q |
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| T |
39306352 |
ttttttgaagatgcagaaactatgatgaggtgcaactcttacccaccttgcagtggcatccatgcaggtgcccttggcactggtcctcattgtgacccaa |
39306253 |
T |
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| Q |
101 |
tctctatcactattctccttcaagatcaagttggaggtcttgaagtttttgctgacaacaaatggcttg |
169 |
Q |
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| T |
39306252 |
cctcagtcaccattctttttcaagatcaagttggaggtctagaagcttttgtggataacaaatggcttg |
39306184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 231
Target Start/End: Complemental strand, 44113970 - 44113859
Alignment:
| Q |
120 |
tcaagatcaagttggaggtcttgaagtttttgctgacaacaaatggcttgctgtgcccccaaagcctgatacctttgtcatcaacataggtgacactttc |
219 |
Q |
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||||||||||||||||||||||||||||||||| || || |||||| | ||||| | ||| | ||||| || | ||||| |||||||||||||||||| |
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| T |
44113970 |
tcaagatcaagttggaggtcttgaagtttttgcagataataaatgggtggctgttcgccctagacctgaagccctagtcattaacataggtgacactttc |
44113871 |
T |
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| Q |
220 |
atggtaagtaaa |
231 |
Q |
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|||||| ||||| |
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| T |
44113870 |
atggtatgtaaa |
44113859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 40553797 - 40553881
Alignment:
| Q |
82 |
ggccctcattgtgacccaatctctatcactattctccttcaagatcaagttggaggtcttgaagtttttgctgacaacaaatggc |
166 |
Q |
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|||||||||||||| |||| ||| || || | || | |||||||||||||||||||||| ||||||||| ||||||||| |||| |
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| T |
40553797 |
ggccctcattgtgatccaacctcaataacactacttcatcaagatcaagttggaggtcttcaagtttttgttgacaacaagtggc |
40553881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 44114086 - 44114037
Alignment:
| Q |
1 |
ttttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttg |
50 |
Q |
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||||||||||||| ||| ||||| |||||||| |||| |||||||||||| |
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| T |
44114086 |
ttttttgaagatggtgactcaataatgagatgtaactattatccaccttg |
44114037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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