View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_4 (Length: 706)
Name: NF18421_low_4
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 4683223 - 4682868
Alignment:
| Q |
9 |
atcataggcatggtgatattcctgttttgtttcatagatcctctgcctgaagcttaaacatcttgcccttcctattgtatggctacctgttgttttttct |
108 |
Q |
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| T |
4683223 |
atcataggcatggtgatattcctgttttgtttcatagatcctctgcctgaagcttaaacatcttgcccttcctattgtatggctacctgttttttttttt |
4683124 |
T |
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| Q |
109 |
t---cccttctaattaattagtaagaactctaagttatcaaatcgagatttaaattttgaatctagaaacttattgttcaagtcgtgaatcgaatcttat |
205 |
Q |
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| T |
4683123 |
ttttcccttctaattaattagtaagaactctaagttatcaaatcgagatttaaattttgaatctagaaatttattgttcaagtcgtgaatcgaatcttat |
4683024 |
T |
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| Q |
206 |
tataaatcataagataattattactaataaaaatatgacagttttaaataaaatttggtgtaaatagaatatacactatagattcgtatcggttgagttc |
305 |
Q |
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| T |
4683023 |
tataaatcataagataattattactaataaaaatatgacagttttaaataaaatttggtgtaaatagaatatacactatagattcgtatcggttgagttc |
4682924 |
T |
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| Q |
306 |
agttttgtattaaatcaagataatttggtctttaaaactgactttatattcaacat |
361 |
Q |
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| T |
4682923 |
agttttgtattaaatcaagataatttggtctttaaaattgactttatattcaacat |
4682868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 412 - 691
Target Start/End: Complemental strand, 4682871 - 4682592
Alignment:
| Q |
412 |
acattattgaagttttataatgataaatatacctgatagaaccaccaggtcctcaatatccagaccctgttgcttaaaattattaattaaagtctctaaa |
511 |
Q |
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| T |
4682871 |
acattattgaagttttataatgataaatatacctgatagaaccaccaggtcttcaatatccagaccctgttgcttaaaattattaattaaagtctctaaa |
4682772 |
T |
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| Q |
512 |
gaggaatttggagcagggatgaataggttggctccactgaaacttgactcaagtgagtccttcctccccagccacacttcccatcttggtcctcctctct |
611 |
Q |
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| T |
4682771 |
gaggaatttggagcagggatgaataggttggctccactgaaacttgactcaagtgagtccttcctccccagccacacttcccatcttggtcctcctctct |
4682672 |
T |
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| Q |
612 |
tcaaaacaaacaacagtggtaaaaagcatggtttatatcatggtgaccctatcaacaatgtagtaaaatacaattgaact |
691 |
Q |
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| T |
4682671 |
tcaaaacaaacaacagtggtaaaaagcatggtttatatcatggtgaccctatcaacaatgtagtaaaatacaattgaact |
4682592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 7896328 - 7896375
Alignment:
| Q |
190 |
gtgaatcgaatcttattataaatcataagataattattactaataaaaat |
239 |
Q |
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| T |
7896328 |
gtgaatcgaatcttattatgaatcttaagata--tattactaataaaaat |
7896375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 51395816 - 51395751
Alignment:
| Q |
191 |
tgaatcgaatcttattataaatcataagataattattactaataaaaatatgacagttttaaataaaa |
258 |
Q |
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| T |
51395816 |
tgaatcgaatcctattatgaatcataagata--tatttccaataaaaatatgatatttttaagtaaaa |
51395751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 6430783 - 6430701
Alignment:
| Q |
139 |
gttatcaaatcgagatttaaattttgaatctagaaacttattgttcaagtcgtgaatcgaatcttattataaatcataagata |
221 |
Q |
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||||||||||||||||| ||||| |||||| | | || |||| | ||| | |||||| ||||||||||| |||||||||||| |
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| T |
6430783 |
gttatcaaatcgagattcaaattgtgaatcaaaagacctattttccaaatgatgaatcaaatcttattatgaatcataagata |
6430701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 36826731 - 36826680
Alignment:
| Q |
190 |
gtgaatcgaatcttattataaatcataagataattattactaataaaaatatga |
243 |
Q |
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||||||||||||||||||| ||| |||||||| ||||||||||||||||||| |
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| T |
36826731 |
gtgaatcgaatcttattatgaattataagata--cattactaataaaaatatga |
36826680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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