View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_41 (Length: 276)
Name: NF18421_low_41
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 39704317 - 39704086
Alignment:
| Q |
29 |
atgcacatgtactaatttgagtctctttgattcaacaaaagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattcgttgaagcggc |
128 |
Q |
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| T |
39704317 |
atgcacatgtaccaatttgagcctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattcgttgaagtggc |
39704218 |
T |
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| Q |
129 |
ataggcgtttttccagtaatcttatgccaacctggcaataacactctgtcaagaaaggtgaggaaaatggatgttgatattaggactataacagaaacag |
228 |
Q |
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| T |
39704217 |
ataggcgtttttccagtaatcttatgccaacatggcaatagcactctgtcaagaaaggtgaggaaaatggatgttgatattatgactataacagaaacag |
39704118 |
T |
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| Q |
229 |
aaccagctgggattttgaaatggggtcctaat |
260 |
Q |
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| T |
39704117 |
aaccagctggaattttgaaatggggtcctaat |
39704086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 39695423 - 39695174
Alignment:
| Q |
11 |
cacagacatggaaacattatgcacatgtactaatttgagtctctttgattcaacaaaagcagagacaaccatgccaagaacagtcaacacatgtcctact |
110 |
Q |
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| T |
39695423 |
cacagacatggaaacattatgcacatgtactaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgct |
39695324 |
T |
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| Q |
111 |
cctattcgttgaagcggcataggcgtttttccagtaatcttatgccaacctggcaataacactctgtcaagaaaggtgaggaaaatggatgttgatatta |
210 |
Q |
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| T |
39695323 |
cctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatatca |
39695224 |
T |
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| Q |
211 |
ggactataacagaaacagaaccagctgggattttgaaatggggtcctaat |
260 |
Q |
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| T |
39695223 |
agactataacagaaacagaactagctgggattttaaaatggggtcctaat |
39695174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 39934694 - 39934940
Alignment:
| Q |
15 |
gacatggaaacattat--gcacatgtactaatttgagtctctttgattcaacaaaagcagagacaaccatgccaagaacagtcaacacatgtcctactcc |
112 |
Q |
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| T |
39934694 |
gacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctcc |
39934793 |
T |
|
| Q |
113 |
tattcgttgaagcggcataggcgtttttccagtaatcttatgccaacctggcaataacactctgtcaagaaaggtgaggaaaatggatgttgatattagg |
212 |
Q |
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| T |
39934794 |
tattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaag |
39934893 |
T |
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| Q |
213 |
actataacagaaacagaaccagctgggattttgaaatggggtcctaa |
259 |
Q |
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| T |
39934894 |
acaataacagaaacaaaactagctgggattttaaaatggggtcctaa |
39934940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 40 - 243
Target Start/End: Original strand, 39929069 - 39929272
Alignment:
| Q |
40 |
ctaatttgagtctctttgattcaacaaaagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattcgttgaagcggcataggcgtttt |
139 |
Q |
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|||||||||||||||| |||||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||||| | || ||| || |||| | ||| |
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| T |
39929069 |
ctaatttgagtctcttcgattcaacaagagcagagaccaccatgccaagaacattgaacacatgtcctactcctatttgatggagcagcttaggagattt |
39929168 |
T |
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| Q |
140 |
tccagtaatcttatgccaacctggcaataacactctgtcaagaaaggtgaggaaaatggatgttgatattaggactataacagaaacagaaccagctggg |
239 |
Q |
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|| |||| ||||||||||| |||||||| ||| ||||||||||| ||||||||||||| || |||||||| |||||||||||||| ||||||||||||| |
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| T |
39929169 |
tctggtaaccttatgccaacttggcaatagcaccctgtcaagaaaagtgaggaaaatgggtgctgatattaagactataacagaaatagaaccagctggg |
39929268 |
T |
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| Q |
240 |
attt |
243 |
Q |
| |
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|||| |
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| T |
39929269 |
attt |
39929272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 33 - 250
Target Start/End: Original strand, 38061739 - 38061960
Alignment:
| Q |
33 |
acatgtactaatttgagtctctttgattcaacaaaagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattcgttgaagcggcatag |
132 |
Q |
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|||||| ||||||||||||| |||| ||||||| ||| ||||||||||| || |||| |||||||||| ||||||||||||||||| |||||||||| |
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| T |
38061739 |
acatgtgctaatttgagtctttttgtctcaacaagagcggagacaaccatacccagaatggtcaacacatagcctactcctattcgttggagcggcatag |
38061838 |
T |
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| Q |
133 |
gcgtttttc-cagtaatcttatgccaacctggcaataacactctgtcaagaaaggtgaggaaaatggatgttgatattaggact---ataacagaaacag |
228 |
Q |
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| T |
38061839 |
gcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgaggaaaatagatgttgatattaacactataataacagaaacag |
38061938 |
T |
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| Q |
229 |
aaccagctgggattttgaaatg |
250 |
Q |
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|||||||||||||||| ||||| |
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| T |
38061939 |
aaccagctgggattttaaaatg |
38061960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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