View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_42 (Length: 273)
Name: NF18421_low_42
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 11119442 - 11119693
Alignment:
| Q |
11 |
catcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctcc |
110 |
Q |
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| T |
11119442 |
catcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctcc |
11119541 |
T |
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| Q |
111 |
atcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcattt |
210 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
11119542 |
atcatcgttgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccattt |
11119641 |
T |
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| Q |
211 |
cctaaattcagcttaggttcaatatacaattcaacatcgcacttcttctcac |
262 |
Q |
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|||||||||| ||||||||||| ||||||||||||||| |||||||| |||| |
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| T |
11119642 |
cctaaattcaccttaggttcaacatacaattcaacatcacacttcttatcac |
11119693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 12205970 - 12206172
Alignment:
| Q |
30 |
aaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttca |
129 |
Q |
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| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
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| Q |
130 |
ccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcagcttaggtt |
229 |
Q |
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| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttaggtt |
12206169 |
T |
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| Q |
230 |
caa |
232 |
Q |
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||| |
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| T |
12206170 |
caa |
12206172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 32741144 - 32741389
Alignment:
| Q |
9 |
gacatcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatct |
108 |
Q |
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||||| |||||||| |||||||||| |||||||| ||||||||||||| |||| |||| |||||||||| ||| |||||||||||||||||||||||||| |
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| T |
32741144 |
gacattatcaaacccatcatcaaccgcagccatcttctcttcttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatct |
32741243 |
T |
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| Q |
109 |
ccatcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcat |
208 |
Q |
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||| |||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
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| T |
32741244 |
ccaccatcgatgtctacttcaccaacatcgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcat |
32741343 |
T |
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| Q |
209 |
ttcctaaattcagcttaggttcaatatacaattcaacatcgcactt |
254 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
32741344 |
ttcctaaattcaccttaggttcaacatacaattcaacatcgcactt |
32741389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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