View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_43 (Length: 272)
Name: NF18421_low_43
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 5725137 - 5725385
Alignment:
| Q |
2 |
agctattgcaaggtttttctacaacaatgtcatacggcttgatgcggtaaagagtgatgaatttattactatgtgtgatatggtttcaaaacatggtgta |
101 |
Q |
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| T |
5725137 |
agctattgcaaggtttttctacaacaatgtcatacggcttgatgcggtaaagagtgatgaatttattactatgtgtgatatggtttcaaaacatggtgta |
5725236 |
T |
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| Q |
102 |
gggtttaagccaccgtctttcgatgagattaaagggaaatatttgacggatgaagttgagtttacaatggaagctttggcagaacatagagctgtgtgga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725237 |
gggtttaagccaccgtctttcgatgagattaaagggaaatatttgacggatgaagttgagtttacaatggaagctttggcagaacatagagctgtgtgga |
5725336 |
T |
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| Q |
202 |
agataacaggttgcaccataatggtcgatgactggtatgatgagaagga |
250 |
Q |
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| T |
5725337 |
agataacaggttgcaccataatggtcgatgactggtatgatgagaagga |
5725385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 4370560 - 4370335
Alignment:
| Q |
6 |
attgcaaggtttttctacaacaatgtcatacggcttgatgcggtaaagagtgatgaatttattactatgtgtgatatggtttcaaaacatggtgtagggt |
105 |
Q |
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||||||||||||||||||||||||| ||||| | ||| |||| | ||||||||||||||| ||||||| |||| ||||||||| ||| || | ||| | |
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| T |
4370560 |
attgcaaggtttttctacaacaatgccataccgtttgcagcggcacagagtgatgaatttaaaactatgtttgatttggtttcaagacaaggcgaaggat |
4370461 |
T |
|
| Q |
106 |
ttaagccaccgtctttcgatgagattaaagggaaatatttgacggatgaagttgagtttacaatggaagctttggcagaacatagagctgtgtggaagat |
205 |
Q |
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| T |
4370460 |
ttaagccaccgtcttatgatgagattagagggaaatatttgacggatgaagttaagttgacaaatgaagctttggaagaacatagagctatgtggaaggt |
4370361 |
T |
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| Q |
206 |
aacaggttgcaccataatggtcgatg |
231 |
Q |
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| T |
4370360 |
aacaggttgcaccataatggttgatg |
4370335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 4366166 - 4365941
Alignment:
| Q |
6 |
attgcaaggtttttctacaacaatgtcatacggcttgatgcggtaaagagtgatgaatttattactatgtgtgatatggtttcaaaacatggtgtagggt |
105 |
Q |
| |
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||||||||||||||||||||||||| ||||| | || |||| ||||||||||||||||| ||||||| |||| ||||||||| ||| || ||||| | |
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| T |
4366166 |
attgcaaggtttttctacaacaatgccataccgtttacagcggcaaagagtgatgaatttaaaactatgtttgatttggtttcaagacaaggcgtaggat |
4366067 |
T |
|
| Q |
106 |
ttaagccaccgtctttcgatgagattaaagggaaatatttgacggatgaagttgagtttacaatggaagctttggcagaacatagagctgtgtggaagat |
205 |
Q |
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|||| |||||||||| |||||||||| ||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||| | ||||| | |
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| T |
4366066 |
ttaatccaccgtcttatgatgagattagagggaaatatttgacggatgaagttaagttgacaaatgaagctttggaggaacatagagctatatggaaagt |
4365967 |
T |
|
| Q |
206 |
aacaggttgcaccataatggtcgatg |
231 |
Q |
| |
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||||||||||||||||||||| |||| |
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| T |
4365966 |
aacaggttgcaccataatggttgatg |
4365941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 194
Target Start/End: Original strand, 4414164 - 4414352
Alignment:
| Q |
7 |
ttgcaaggtttttctacaacaatgtcatacggcttgatgcggtaaagagtgatgaatttattactatgtgtgatatggtttcaaaacatggtgtagggtt |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||| |||| || |
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| T |
4414164 |
ttgcaaggtttttctacaacaatgacataccgcttgatgcggtaaagagtgatgagtttattactatgtgtcagttggtttcaagacatgggttaggatt |
4414263 |
T |
|
| Q |
107 |
taagccaccgtctttcgatgagatt-aaagggaaatatttgacggatgaagttgagtttacaatggaagctttggcagaacatagagct |
194 |
Q |
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| T |
4414264 |
tgtgccaccttcttttgatgaccttaaaagggaaatatttggcggaagaagttaagttgacaaaggaagctttggtagaacatagagct |
4414352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 231
Target Start/End: Complemental strand, 4360716 - 4360539
Alignment:
| Q |
54 |
agtgatgaatttattactatgtgtgatatggtttcaaaacatggtgtagggtttaagccaccgtctttcgatgagattaaagggaaatatttgacggatg |
153 |
Q |
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||||||||||||| || ||||||||| ||||||||| |||||| ||||| |||||||||||| ||| ||| ||| | |||||||||| |||| | |
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| T |
4360716 |
agtgatgaatttaagacaatgtgtgatttggtttcaagacatggcgtaggatttaagccaccggggttctttgatattggatggaaatattttccggaag |
4360617 |
T |
|
| Q |
154 |
aagttgagtttacaatggaagctttggcagaacatagagctgtgtggaagataacaggttgcaccataatggtcgatg |
231 |
Q |
| |
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|| || |||| || | |||| ||||| ||||||||||||| |||||||||| |||||||||| |||||||||||||| |
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| T |
4360616 |
aaattaagttgacgaatgaagttttggaagaacatagagctatgtggaagatcacaggttgcagcataatggtcgatg |
4360539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 4390407 - 4390245
Alignment:
| Q |
1 |
gagctattgcaaggtttttctacaacaatgtcatacggcttgatgcggtaaagagtgatgaatttattactatgtgtgatatggtttcaaaacatggtgt |
100 |
Q |
| |
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|||| ||||| ||||||||||||||||||| |||| | | | ||||| |||||| | || ||| ||| ||||||||||||||||| | | |||||| |
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| T |
4390407 |
gagcgattgcgaggtttttctacaacaatgcaataccgatgaaggcggtgaagagtaaggagtttgttagaatgtgtgatatggtttcgagatgtggtgt |
4390308 |
T |
|
| Q |
101 |
agggtttaagccaccgtctttcgatgagattaaagggaaatatttgacggatgaagttgagtt |
163 |
Q |
| |
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||||||| ||| |||||||| ||||||||||||||||| ||||||| ||| |||||| |||| |
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| T |
4390307 |
agggtttgtgccgccgtcttttgatgagattaaagggaagtatttgagggaagaagttaagtt |
4390245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 4377653 - 4377562
Alignment:
| Q |
72 |
atgtgtgatatggtttcaaaacatggtgtagggtttaagccaccgtctttcgatgagattaaagggaaatatttgacggatgaagttgagtt |
163 |
Q |
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||||||||||||||||| | | ||||||||||||| ||| |||||||| ||||||||||||||||| ||||||| ||| |||||| |||| |
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| T |
4377653 |
atgtgtgatatggtttcgagatgtggtgtagggtttgtgccgccgtcttttgatgagattaaagggaagtatttgagggaagaagttaagtt |
4377562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 4385223 - 4385132
Alignment:
| Q |
72 |
atgtgtgatatggtttcaaaacatggtgtagggtttaagccaccgtctttcgatgagattaaagggaaatatttgacggatgaagttgagtt |
163 |
Q |
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||||||| ||||||||| | | ||||||||||||| ||| || ||||| |||||||||| |||||| ||||||| ||| |||||| |||| |
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| T |
4385223 |
atgtgtgctatggtttcgagatgtggtgtagggtttgtgccgccatcttttgatgagattagagggaagtatttgagggaagaagttaagtt |
4385132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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