View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_49 (Length: 254)
Name: NF18421_low_49
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_49 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 92 - 254
Target Start/End: Complemental strand, 4789216 - 4789054
Alignment:
| Q |
92 |
ctatagagcaattaattttcaaagaatttcaaactagacaataaaagtgttatcttttgtttttaagtttcttactaaatgtttttcctcaattaaaatc |
191 |
Q |
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| T |
4789216 |
ctatagagcaattaattttcaaagaatttcaaactaggcaataaaagtgttatcttttgtttttaagtttcttactaaatgtttttcctcgatcagagtc |
4789117 |
T |
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| Q |
192 |
cgagcaaaaactccactatgaatcaacgtttacaatggtgtaaaataacaaagcttaagactc |
254 |
Q |
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| T |
4789116 |
cgagcaaaaactccactatgaatcaacgtttacaatggtgtgaaatcacaaagcttaagactc |
4789054 |
T |
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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 4792451 - 4792380
Alignment:
| Q |
19 |
accaaaactttcccagttgaggcttttgctacggaacagtaacagatgcaaccaaatatcatgtgactatag |
90 |
Q |
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| T |
4792451 |
accaaaactttcccagttgaggcttttgctacgggacagtaatagatgcaactaaatatcatgtgactatag |
4792380 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 20724527 - 20724473
Alignment:
| Q |
188 |
aatccgagcaaaaactccactatgaatcaacgtttacaatggtgtaaaataacaa |
242 |
Q |
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| T |
20724527 |
aatccgagcaaaaactccactacgaatcaatgcttacactggtgtgaaatcacaa |
20724473 |
T |
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