View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_5 (Length: 702)
Name: NF18421_low_5
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 173 - 684
Target Start/End: Complemental strand, 40397367 - 40396856
Alignment:
| Q |
173 |
cttcaattttgaattatgtctagcaagttggcccgtcaattaatttgtatatgatttatcgtcaaattaatccttaaattacatcatttatcgtcaaatt |
272 |
Q |
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| T |
40397367 |
cttcaattttgaattatgtctagcaagttggctcgtcaattaatttgtatatgatttattgtcaaattaatccttaaattacatcatttatcgtcaaatt |
40397268 |
T |
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| Q |
273 |
agttctaactacaagttaacaaaatgataaaatcgatcgttgtcattcaaaatcagggtcatttttatctattcacgaatttcataggtgtaaatgtttc |
372 |
Q |
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| T |
40397267 |
agttctaactacaagttaacaaaatgataaaatcgatcgatgtcattcaaaatcagggtcatttttatatattcacgaatttcataggtgtaaatgtttc |
40397168 |
T |
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| Q |
373 |
gagcttacaatggatggagacttaatccactactctcctccattaatttaatgaattaattacttttacatgaatattctcgaaaagttttgggagatac |
472 |
Q |
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| T |
40397167 |
gagcttacaatggatggagacttaatccactactctcctccattaatttaatgaattaattacttttacatgaatattctcgaaaagttttgggagatac |
40397068 |
T |
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| Q |
473 |
tctttgggatatccattggtaaaattcatgacactggctaactaactatagtagtattccttttgatgtgtaatcgcatttgatggttgtgatcttaact |
572 |
Q |
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| T |
40397067 |
tctttgggatatccattggtaaaattcatgacactggctaactaactatagtagtattccttttgatgtgtaatcgcatttgatggttgtgatcttaact |
40396968 |
T |
|
| Q |
573 |
cctttggaataaagaagggaatgaacggtggataagaaagttgagtttgatgatggagaatatgctgtcatgcttaaacaagaacacctttgcaatttga |
672 |
Q |
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| T |
40396967 |
cctttggaataaagaagggaatgaacggtggataagaaagttgagtttgatgatggagaatatgctgtcatgcttaaacaagaacacctttgcaatttga |
40396868 |
T |
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| Q |
673 |
cctaggtatctc |
684 |
Q |
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| T |
40396867 |
cctaggtatctc |
40396856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 40397547 - 40397393
Alignment:
| Q |
1 |
aaatcacacagacctcgagaccaacgccgatgaaagaatcaatttttaagtcctttgagtttctttggttcgaaaagatttttatattgaaaaattgaat |
100 |
Q |
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| T |
40397547 |
aaatcacacagacctctagaccaacgccgatgaaagaatcaatttttaagtcctttgagtttctttgcttcgaaaagatttttatattgaaaaattgaat |
40397448 |
T |
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| Q |
101 |
aaatcacaaatttgcaagagtcagagatgtacaatcttaaaatttgcaaatagat |
155 |
Q |
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| T |
40397447 |
aaatcacaaatttgcaagagtcaaagatgtacaatcttaaaatttgcaaatagat |
40397393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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