View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18421_low_52 (Length: 237)
Name: NF18421_low_52
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 27148697 - 27148500
Alignment:
| Q |
16 |
taagagagatgattgtgattccaagtgtcacggtaaatcacaaacatttcgagctgaaacatttcaaattttattttaattattattgaaatacatagga |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27148697 |
taagagagatgattgtgaatccaagtgtcacggtaaatcacaaacatttcgagctgaaacatttcaaattttattttaattattattgaaatacatagga |
27148598 |
T |
|
| Q |
116 |
tagagaccctagtggggattcagttacaatcggagaatttaagccatctcctttattctgttttgcttatcaccacaaaccctggaagctgctcaacact |
215 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27148597 |
tagagaccctagtggggat--------aatcggagaatttaagccatctcctttattctgttttgcttatcaccacaaaccctggaagctgctcaacact |
27148506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 27158869 - 27158693
Alignment:
| Q |
50 |
aaatcacaaacatttcgagctgaaacatttcaaattttattttaattattattg-aaatacataggatagagaccctagtggggattcag-ttacaatcg |
147 |
Q |
| |
|
||||||| || |||| ||||| |||||||||||| ||||| ||||||||||| | |||||||||| | ||||| |||||||||||||||| ||||||||| |
|
|
| T |
27158869 |
aaatcacgaaaattttgagctaaaacatttcaaactttatattaattattatcgaaaatacatagtaaagagatcctagtggggattcagattacaatcg |
27158770 |
T |
|
| Q |
148 |
gagaatttaagccatctcctttattctgttttgcttat---caccacaaaccctggaagctgctcaacactagttta |
221 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||| |||| ||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
27158769 |
gagaatttaagccaactccattattaagttttggttattactaccacaaaccctgcaagctgctcaatactaattta |
27158693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 27135545 - 27135424
Alignment:
| Q |
57 |
aaacatttcgagctgaaacatttcaaattttattttaattattattgaaatacataggatagaga-ccctagtggggattcagttacaatcggagaattt |
155 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||||||| || | | || |||||||| | | ||||| ||||||| |||||| ||||||||||||||| || |
|
|
| T |
27135545 |
aaacattttgagcttaaacatttcaaagtttattttcatcactgttcaaatacatggtaaagagatccctagttgggatttggttacaatcggagaaatt |
27135446 |
T |
|
| Q |
156 |
aagccatctcctttattctgtt |
177 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
27135445 |
aagtcatctcctttattctgtt |
27135424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 27314253 - 27314152
Alignment:
| Q |
69 |
ctgaaacatttcaaattttattttaattattattgaaatacatag-gatagagaccctagtggggattcagttacaatcggagaatttaagccatctcct |
167 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||| |||||||||| ||| ||||||||||||||| | |||||||||||||||||||| |||| || |
|
|
| T |
27314253 |
ctgaaacatttcagattttattt-aattatcattaaaatacatagtgat-----ccctagtggggattcggctacaatcggagaatttaagcaatcttct |
27314160 |
T |
|
| Q |
168 |
ttattctg |
175 |
Q |
| |
|
|||||||| |
|
|
| T |
27314159 |
ttattctg |
27314152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 27221270 - 27221213
Alignment:
| Q |
138 |
gttacaatcggagaatttaagccatctcctttattctgttttgcttatcaccacaaac |
195 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27221270 |
gttacagtcggagaaattaaatcatctcctttattctgttttggttatcaccacaaac |
27221213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 27323506 - 27323460
Alignment:
| Q |
130 |
gggattcagttacaatcggagaatttaagccatctcctttattctgt |
176 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||| ||||||||||| |
|
|
| T |
27323506 |
gggattcagttacaatggaagaaattaagccatcttctttattctgt |
27323460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 27302260 - 27302212
Alignment:
| Q |
70 |
tgaaacatttcaaattttattttaattattattgaaatacataggatag |
118 |
Q |
| |
|
||||| |||||| |||||||||||||||| || ||||||||||| |||| |
|
|
| T |
27302260 |
tgaaatatttcagattttattttaattatcatggaaatacatagtatag |
27302212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University