View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18421_low_56 (Length: 227)

Name: NF18421_low_56
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18421_low_56
NF18421_low_56
[»] chr7 (7 HSPs)
chr7 (13-219)||(17734464-17734670)
chr7 (18-219)||(17743704-17743905)
chr7 (13-219)||(16720480-16720686)
chr7 (13-219)||(17697494-17697700)
chr7 (13-219)||(17716413-17716619)
chr7 (13-219)||(16729353-16729559)
chr7 (13-219)||(17706425-17706631)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 17734670 - 17734464
Alignment:
Q  13 catcagagagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggacc 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||    
T  17734670 catcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggacc 17734571  T
Q  113 ctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttg 212  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  17734570 ctcggagccggcagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttg 17734471  T
Q  213 atgatgt 219  Q
     ||||||    
T  17734470 gtgatgt 17734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 17743905 - 17743704
Alignment:
Q  18 gagagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcgg 117  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  17743905 gagagcacagaagaaacaacctgagagcataacgatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcgg 17743806  T
Q  118 agccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttgatgat 217  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| ||||    
T  17743805 agccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgat 17743706  T
Q  218 gt 219  Q
    ||    
T  17743705 gt 17743704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 16720686 - 16720480
Alignment:
Q  13 catcagagagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggacc 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | ||||||    
T  16720686 catcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggacc 16720587  T
Q  113 ctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttg 212  Q
    ||||||||||||||  |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||    
T  16720586 ctcggagccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttg 16720487  T
Q  213 atgatgt 219  Q
     ||||||    
T  16720486 gtgatgt 16720480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 17697700 - 17697494
Alignment:
Q  13 catcagagagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggacc 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | ||||||    
T  17697700 catcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggacc 17697601  T
Q  113 ctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttg 212  Q
    ||||||||||||||  |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||    
T  17697600 ctcggagccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttg 17697501  T
Q  213 atgatgt 219  Q
     ||||||    
T  17697500 gtgatgt 17697494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 17716619 - 17716413
Alignment:
Q  13 catcagagagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggacc 112  Q
    |||| ||||||||||||||||| ||| ||||| ||||||||||||||| ||||  |||||| |||||||||||| |||||||||| ||||| | ||||||    
T  17716619 catcggagagcacagaagaaaccagccgagagtataaggatttgagattaccgggggattctgactggaggaaggagagaagttgtttttgagtgggacc 17716520  T
Q  113 ctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttg 212  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| || ||||||||||||||||    
T  17716519 ctcggagccggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttg 17716420  T
Q  213 atgatgt 219  Q
     ||||||    
T  17716419 gtgatgt 17716413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 16729559 - 16729353
Alignment:
Q  13 catcagagagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggacc 112  Q
    |||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||   |||||||||||||||||| |||||||||| ||||| | ||||||    
T  16729559 catcggagagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacc 16729460  T
Q  113 ctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttg 212  Q
    || ||||| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||    
T  16729459 cttggagctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttg 16729360  T
Q  213 atgatgt 219  Q
     ||||||    
T  16729359 gtgatgt 16729353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 17706631 - 17706425
Alignment:
Q  13 catcagagagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggacc 112  Q
    |||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||   |||||||||||||||||| |||||||||| ||||| | ||||||    
T  17706631 catcggagagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacc 17706532  T
Q  113 ctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttg 212  Q
    || ||||| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||    
T  17706531 cttggagctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttg 17706432  T
Q  213 atgatgt 219  Q
     ||||||    
T  17706431 gtgatgt 17706425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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