View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_59 (Length: 217)
Name: NF18421_low_59
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 24419098 - 24418911
Alignment:
| Q |
14 |
cacagataatagtggtcatattacctttgaagaactcaaggttggactgaaaagatttggtgccaatctaaaagaatcagaaatttacgatctaatgaaa |
113 |
Q |
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| T |
24419098 |
cacagataatagtggtcatattacctttgaagaactcaaggttggactgaaaagatttggtgccaatctaaaagaatcagaaatttacgatctaatgaaa |
24418999 |
T |
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| Q |
114 |
gctgtaagtataattcaggaccgtctttatttcgtcaacttcacgaaaccttagttaactatagctgttaacttctgtagtatctact |
201 |
Q |
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| T |
24418998 |
gctgtaagtataattcaggaccgtctttatttcgtcaacttcacgaaaccttagttaactatagctgctaacttctgtagtatctact |
24418911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 18402199 - 18402308
Alignment:
| Q |
15 |
acagataatagtggtcatattacctttgaagaactcaaggttggactgaaaagatttggtgccaatctaaaagaatcagaaatttacgatctaatgaaag |
114 |
Q |
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| T |
18402199 |
acagataacagtggccaaatcacttttgaagaacttaaagttggtttgaaaaaagttggtgctaatcttaaggagtctgaaatttatgatttaatgcaag |
18402298 |
T |
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| Q |
115 |
ctgtaagtat |
124 |
Q |
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| T |
18402299 |
cggtaagtat |
18402308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 43455418 - 43455527
Alignment:
| Q |
15 |
acagataatagtggtcatattacctttgaagaactcaaggttggactgaaaagatttggtgccaatctaaaagaatcagaaatttacgatctaatgaaag |
114 |
Q |
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| T |
43455418 |
acagacaatactggtcaaattacctttgaaaaactcaaggttggactgaaaaagtttggtgccaatctctctgaatccgaaatttttgatctaatgcaag |
43455517 |
T |
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| Q |
115 |
ctgtaagtat |
124 |
Q |
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| T |
43455518 |
ctgtaagtat |
43455527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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