View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18421_low_6 (Length: 619)
Name: NF18421_low_6
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18421_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 233 - 612
Target Start/End: Complemental strand, 10033042 - 10032661
Alignment:
| Q |
233 |
tagctattaatgtggtgtttctaattatatccctaaagtaagggaattagaatcctataaagttaacattaaagtcatcaataatttactttaacatatg |
332 |
Q |
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| T |
10033042 |
tagctattaatgtggtgtttctaattatatccctaaagtaagggaattagaatcctataaagttaacattaaagtcatcaataatttactttaacatatg |
10032943 |
T |
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| Q |
333 |
ttctcctttatatccggggcctatatgtggatttttctagataagaaaggcatcgttttcttttgtagtcaa--tccaacgaattaattaacttttgtga |
430 |
Q |
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| T |
10032942 |
ttctcctttatatccggggcctatatgtggatttttctagataagaaaggcatcgttttcttttgtagtcaaaatccaacgaattaattaacttttgtga |
10032843 |
T |
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| Q |
431 |
gtggctataaagctataataaaagatgaacagcacttggaataaacaaataccgcaagatatggttgatgagacttatcattgtgttttagtggccaata |
530 |
Q |
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| T |
10032842 |
gtggctataaagctataataaaagatgaacagcacttggaataaacaaataccgcaagatatggttgatgagacttatcattgtgttttagtggccaata |
10032743 |
T |
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| Q |
531 |
aaactcatatcattggccccctttatgctataatgatcggaaattgaagttaataatgtgctactcgttcatatattcttgg |
612 |
Q |
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| T |
10032742 |
aaactcatatcattggccccctttatgctataatgatcggaaattgaagttaataatgtgctactcgttcatatattattgg |
10032661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 10033252 - 10033091
Alignment:
| Q |
16 |
caatagttgtcttcatattcataaactccaatggtgaattcttccctggaagctgaaaaatcattcctggtgataatagccaaaatagagctgcagctat |
115 |
Q |
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| T |
10033252 |
caatagttgtcttcatattcataaactccaatggtgaattcttccctggaagctgaaaaatcattcctggtgataatagccaaaataaagctgcagctat |
10033153 |
T |
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| Q |
116 |
gagaggaggagcccaattattcattgtctatccctctaagaataaattccaaagcttgaatg |
177 |
Q |
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| T |
10033152 |
gagaggaggagcccaattattcattctctatacctctaagaatcaattccaatgcttgaatg |
10033091 |
T |
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