View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18421_low_61 (Length: 212)

Name: NF18421_low_61
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18421_low_61
NF18421_low_61
[»] chr3 (21 HSPs)
chr3 (19-196)||(4221292-4221469)
chr3 (64-154)||(1610005-1610095)
chr3 (64-168)||(47648996-47649100)
chr3 (57-152)||(29438525-29438620)
chr3 (64-130)||(145487-145553)
chr3 (64-154)||(21662155-21662245)
chr3 (64-168)||(11985286-11985392)
chr3 (65-168)||(24481806-24481909)
chr3 (62-152)||(43615953-43616042)
chr3 (70-153)||(1829593-1829676)
chr3 (63-126)||(42591308-42591370)
chr3 (66-124)||(8560022-8560080)
chr3 (69-102)||(19560237-19560270)
chr3 (63-124)||(21434248-21434309)
chr3 (64-140)||(38640143-38640219)
chr3 (67-123)||(48757538-48757594)
chr3 (63-123)||(51818029-51818089)
chr3 (74-124)||(788419-788472)
chr3 (64-103)||(43788859-43788898)
chr3 (63-136)||(19237450-19237523)
chr3 (70-123)||(19269348-19269401)
[»] chr7 (21 HSPs)
chr7 (63-170)||(44629465-44629572)
chr7 (64-168)||(12467574-12467678)
chr7 (67-153)||(12640304-12640390)
chr7 (63-153)||(40954850-40954940)
chr7 (63-151)||(19362677-19362765)
chr7 (64-153)||(12820372-12820461)
chr7 (64-168)||(21267791-21267895)
chr7 (64-152)||(31642864-31642952)
chr7 (64-170)||(26074929-26075034)
chr7 (64-170)||(26098716-26098821)
chr7 (71-134)||(9698090-9698153)
chr7 (68-139)||(21510268-21510339)
chr7 (64-123)||(27348212-27348271)
chr7 (66-102)||(44598695-44598731)
chr7 (64-124)||(47535444-47535504)
chr7 (64-103)||(7356231-7356270)
chr7 (64-123)||(38826223-38826282)
chr7 (64-110)||(8061499-8061545)
chr7 (64-102)||(18774829-18774867)
chr7 (64-133)||(30682585-30682654)
chr7 (67-103)||(34535261-34535297)
[»] chr8 (19 HSPs)
chr8 (64-154)||(27084263-27084353)
chr8 (65-152)||(24887989-24888076)
chr8 (64-164)||(12826570-12826670)
chr8 (64-136)||(24643625-24643697)
chr8 (65-152)||(25431054-25431141)
chr8 (63-153)||(33011815-33011905)
chr8 (63-140)||(8789796-8789873)
chr8 (64-102)||(24915664-24915702)
chr8 (63-124)||(35890910-35890971)
chr8 (64-133)||(35958799-35958868)
chr8 (63-123)||(5643232-5643292)
chr8 (64-120)||(30732007-30732063)
chr8 (63-103)||(35396574-35396614)
chr8 (64-123)||(5572543-5572602)
chr8 (64-135)||(10890640-10890711)
chr8 (64-133)||(13280122-13280189)
chr8 (62-102)||(46960-47000)
chr8 (63-102)||(16978298-16978338)
chr8 (64-124)||(21519578-21519638)
[»] chr1 (19 HSPs)
chr1 (66-152)||(28702233-28702319)
chr1 (64-137)||(14876784-14876857)
chr1 (65-153)||(23826182-23826270)
chr1 (64-168)||(34870603-34870707)
chr1 (63-168)||(50432531-50432636)
chr1 (63-168)||(29773681-29773786)
chr1 (64-151)||(52453677-52453764)
chr1 (67-168)||(49289899-49290000)
chr1 (65-151)||(171149-171234)
chr1 (67-133)||(29663840-29663906)
chr1 (64-118)||(10778453-10778507)
chr1 (66-123)||(44352232-44352288)
chr1 (71-139)||(15554460-15554528)
chr1 (64-124)||(42138592-42138652)
chr1 (64-102)||(3712819-3712857)
chr1 (107-152)||(4808524-4808569)
chr1 (62-102)||(25244886-25244926)
chr1 (64-124)||(44091217-44091276)
chr1 (64-120)||(47476556-47476612)
[»] chr5 (24 HSPs)
chr5 (64-169)||(16717159-16717264)
chr5 (64-133)||(19645448-19645517)
chr5 (71-170)||(32632997-32633096)
chr5 (66-167)||(15107759-15107859)
chr5 (64-124)||(28866167-28866226)
chr5 (70-124)||(18768229-18768283)
chr5 (63-123)||(14316976-14317035)
chr5 (64-118)||(38054318-38054372)
chr5 (67-124)||(4306880-4306937)
chr5 (64-133)||(24441801-24441870)
chr5 (63-124)||(32151180-32151241)
chr5 (63-123)||(2985698-2985758)
chr5 (63-123)||(15497687-15497747)
chr5 (64-103)||(29986764-29986803)
chr5 (64-102)||(16633626-16633664)
chr5 (64-134)||(34731849-34731919)
chr5 (64-102)||(37022786-37022824)
chr5 (63-133)||(43541206-43541276)
chr5 (64-133)||(4819833-4819902)
chr5 (63-124)||(32274979-32275040)
chr5 (70-102)||(8209925-8209957)
chr5 (64-120)||(13760335-13760391)
chr5 (63-123)||(15917280-15917340)
chr5 (64-124)||(36560798-36560858)
[»] chr6 (10 HSPs)
chr6 (67-154)||(32786611-32786697)
chr6 (64-153)||(20612960-20613049)
chr6 (64-154)||(6719788-6719875)
chr6 (63-152)||(14533759-14533845)
chr6 (93-139)||(32125919-32125965)
chr6 (63-123)||(2753680-2753740)
chr6 (64-120)||(33582820-33582876)
chr6 (64-102)||(30590215-30590253)
chr6 (66-123)||(13647444-13647501)
chr6 (63-123)||(34385163-34385223)
[»] chr4 (31 HSPs)
chr4 (64-135)||(50070176-50070247)
chr4 (64-168)||(29924525-29924629)
chr4 (64-132)||(33226277-33226345)
chr4 (64-153)||(49497649-49497738)
chr4 (65-168)||(19097196-19097299)
chr4 (69-136)||(47383878-47383945)
chr4 (64-146)||(26494694-26494776)
chr4 (71-134)||(13564467-13564530)
chr4 (67-153)||(46851865-46851949)
chr4 (69-132)||(52489818-52489881)
chr4 (63-153)||(30828547-30828636)
chr4 (64-146)||(37986928-37987010)
chr4 (64-131)||(2930316-2930383)
chr4 (64-119)||(31523173-31523228)
chr4 (67-168)||(52797632-52797733)
chr4 (64-135)||(13442198-13442267)
chr4 (63-123)||(50720128-50720188)
chr4 (67-120)||(37818674-37818727)
chr4 (62-133)||(29132908-29132979)
chr4 (64-123)||(49908435-49908494)
chr4 (66-124)||(29096400-29096458)
chr4 (64-133)||(14968137-14968206)
chr4 (67-123)||(5517146-5517202)
chr4 (63-123)||(6211699-6211759)
chr4 (63-123)||(12679888-12679948)
chr4 (118-153)||(2930401-2930436)
chr4 (67-121)||(17555277-17555331)
chr4 (64-133)||(27993623-27993692)
chr4 (63-120)||(40704918-40704975)
chr4 (63-103)||(53436540-53436580)
chr4 (71-143)||(54085453-54085525)
[»] chr2 (15 HSPs)
chr2 (64-168)||(4580554-4580658)
chr2 (64-168)||(38972215-38972319)
chr2 (65-154)||(4056207-4056296)
chr2 (63-134)||(9615681-9615753)
chr2 (64-153)||(38575567-38575655)
chr2 (62-146)||(30076216-30076300)
chr2 (64-153)||(1315149-1315238)
chr2 (64-133)||(6590403-6590472)
chr2 (67-170)||(5890605-5890708)
chr2 (64-120)||(31162322-31162377)
chr2 (64-103)||(12060094-12060133)
chr2 (73-124)||(17302996-17303047)
chr2 (65-124)||(42834675-42834734)
chr2 (64-134)||(32399198-32399268)
chr2 (67-120)||(31266565-31266618)
[»] scaffold0325 (1 HSPs)
scaffold0325 (64-137)||(19761-19834)
[»] scaffold0060 (1 HSPs)
scaffold0060 (64-151)||(35908-35996)
[»] scaffold0057 (1 HSPs)
scaffold0057 (63-123)||(63813-63873)
[»] scaffold0015 (1 HSPs)
scaffold0015 (63-133)||(64721-64791)
[»] scaffold0006 (1 HSPs)
scaffold0006 (64-102)||(230611-230649)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 4221469 - 4221292
Alignment:
Q  19 gggtatgtttcttagaatttcatttagattccttttagttgtgcacagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatat 118  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  4221469 gggtctgtttcttagaatctcatttagattctttttagttgtgcacagtggcggatcttgaattaatttgttgggggtgccaaacttctatgaaatatat 4221370  T
Q  119 attaaatggtttcaagaagtaacaataattaataatcaacctagtggtataannnnnnngaaaggagcaagaggatgt 196  Q
    ||||||  |||||||||||||| |||||||||||| | ||||||||||||||       |||| ||||||||||||||    
T  4221369 attaaacagtttcaagaagtaataataattaataaccgacctagtggtataaattttttgaaaagagcaagaggatgt 4221292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 1610095 - 1610005
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataat 154  Q
    |||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||    
T  1610095 cagtggcggatcttgacttaaattgctgggggtgccaaacttttatggaatatatattaaatggtttcaagaagtagtaataattaataat 1610005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 47648996 - 47649100
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 163  Q
    ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||   || ||||||||||||||   ||||||    
T  47648996 cagtggcggatcttgagttaaattcttgggggtgccaaatttctatggaatatatattaaatggtttcaagttatatcaataattaataattggcctagt 47649095  T
Q  164 ggtat 168  Q
    |||||    
T  47649096 ggtat 47649100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 29438620 - 29438525
Alignment:
Q  57 ttgtgcacagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 152  Q
    |||||| |||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||| | || ||||||||||||    
T  29438620 ttgtgcgcagtggcgaatcttgagttaatttgttgggagtgtcaaacttttatggaatatatattaactggtttcaagtattatcaataattaata 29438525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 145553 - 145487
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggttt 130  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  145553 cagtggcggatcttgacttaatttgttgggggtgccaaacttctatgtaatatatattaaatggttt 145487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 21662155 - 21662245
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataat 154  Q
    ||||||||||||||||||||| ||  |||| |||||||| ||||||||||||||||||||||||||||||||  || ||||||||||||||    
T  21662155 cagtggcggatcttgagttaaattcctgggagtgccaaatttctatggaatatatattaaatggtttcaagatatatcaataattaataat 21662245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 11985286 - 11985392
Alignment:
Q  64 cagtggcggatcttgagttaa--tttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaaccta 161  Q
    |||||||||||||||||||||  ||| ||||| |||||||| |||||| |||||||||||||||||||||||||  || ||||||||||||||   ||||    
T  11985286 cagtggcggatcttgagttaacttttcttgggagtgccaaatttctattgaatatatattaaatggtttcaagatatatcaataattaataattggccta 11985385  T
Q  162 gtggtat 168  Q
    |||||||    
T  11985386 gtggtat 11985392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 24481806 - 24481909
Alignment:
Q  65 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtg 164  Q
    |||||||||||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||||  || || ||| |||||||   |||||||    
T  24481806 agtggcggatcttgagttaaatttttgagggtgtcaaacttctatggaatatatattaaatggtttcaagatatatcagtaaataataattggcctagtg 24481905  T
Q  165 gtat 168  Q
    ||||    
T  24481906 gtat 24481909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 43616042 - 43615953
Alignment:
Q  62 cacagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 152  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | | |||||| | || ||||||||||||    
T  43616042 cacagtggcggatcttgagttaatttgttgggggtgtcaaacttttatggaatatatattaactag-ttcaagtattatcaataattaata 43615953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 1829676 - 1829593
Alignment:
Q  70 cggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 153  Q
    |||||||||||| ||||| || |||||| |||||||||||||||||||||| |||  |||| ||||| ||||||||| ||||||    
T  1829676 cggatcttgagtaaatttttttggggtgtcaaacttctatggaatatatatcaaacagttttaagaactaacaataaataataa 1829593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 42591370 - 42591308
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatg 126  Q
    |||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||    
T  42591370 acagtggcggatcttgagttaatttgtt-gggatgttaaacttctatggaatatatattaaatg 42591308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 8560022 - 8560080
Alignment:
Q  66 gtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    |||||||||||||||| |||||||||||||||||||||  ||||| ||| |||||||||    
T  8560022 gtggcggatcttgagtaaatttgttgggggtgccaaaccactatgaaatgtatattaaa 8560080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 19560237 - 19560270
Alignment:
Q  69 gcggatcttgagttaatttgttgggggtgccaaa 102  Q
    ||||||||||||||||||||||||||||||||||    
T  19560237 gcggatcttgagttaatttgttgggggtgccaaa 19560270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 21434309 - 21434248
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    ||||||| ||||||||||||| ||| | |||||| ||||| ||||||| |||||||||||||    
T  21434309 acagtggtggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaaa 21434248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 38640219 - 38640143
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaa 140  Q
    |||||||||||||||| ||| ||| |||||||| || ||||  ||||||||||||||| ||  |||||||| |||||    
T  38640219 cagtggcggatcttgacttattttcttgggggtaccgaactattatggaatatatattcaaatgtttcaagtagtaa 38640143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 48757538 - 48757594
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||||    
T  48757538 tggcggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaa 48757594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 51818029 - 51818089
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||||||||||||||||| ||| ||| |||| | ||| ||||||| ||||||||||||    
T  51818029 acagtggcggatcttgagttattttcttgagggtacaaaaattctatgaaatatatattaa 51818089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 788419 - 788472
Alignment:
Q  74 tcttgagttaatttgttgg---gggtgccaaacttctatggaatatatattaaa 124  Q
    ||||||||||||||||| |   ||||||||||||| ||||||||||||||||||    
T  788419 tcttgagttaatttgtttgttggggtgccaaacttttatggaatatatattaaa 788472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 43788859 - 43788898
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaac 103  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  43788859 cagtggcggatcttgagtaaatttcttgggggtgccaaac 43788898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 19237523 - 19237450
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaa 136  Q
    ||||||| ||||||||||||| ||| |||||||| |||||  | |||| |||||||||||| | |||| |||||    
T  19237523 acagtggtggatcttgagttattttcttgggggtaccaaaagtttatgaaatatatattaagttgtttgaagaa 19237450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 19269348 - 19269401
Alignment:
Q  70 cggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    |||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||||    
T  19269348 cggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaa 19269401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 44629572 - 44629465
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctag 162  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||| |||   ||||||    
T  44629572 acagtggcggatcttgagttgatttgtagggggtgccaaacttctatggaatatatattaaacggtttcaagaagatacaataattagtaactgacctag 44629473  T
Q  163 tggtataa 170  Q
    ||||||||    
T  44629472 tggtataa 44629465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 12467574 - 12467678
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 163  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| || || |||| |||||||| || ||||||    
T  12467574 cagtggcggatcttgagttaaattgttgggggtgccaaacatatatggaatatatattaaatggtttcaaaaaatatcaattattaataaccatcctagt 12467673  T
Q  164 ggtat 168  Q
    |||||    
T  12467674 ggtat 12467678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 12640304 - 12640390
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 153  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | | | ||||||||||||||||    
T  12640304 tggcggatcttgagttaatttgtcgggggtgccaaacttttatggaatatatattaaatggttttacgcattaacaataattaataa 12640390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 40954850 - 40954940
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 153  Q
    |||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||| || |||| ||||||||    
T  40954850 acagtggcggatcttgagttaaattgttgggggtgccaaacatatatgaaatatatattaaatggtttcaagaaatatcaattattaataa 40954940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 19362765 - 19362677
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaat 151  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||  ||||||||||    
T  19362765 acagtggcggatcttgagttattttgttgggggtgccaaacttttatggaatatatattaactggtttcaagtattattaataattaat 19362677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 12820372 - 12820461
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 153  Q
    ||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||| || |||| ||| ||||    
T  12820372 cagtggcggatcttgagttaaattgttgggggtgccaaacatatatgaaatatatattaaatggtttcaagaaatatcaattatttataa 12820461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 21267895 - 21267791
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 163  Q
    |||||||||||||||| |||| || |||||||||||||| |||||| ||||||||||||||||||||||||   || ||||||||||||||   ||||||    
T  21267895 cagtggcggatcttgaattaaattcttgggggtgccaaatttctatagaatatatattaaatggtttcaagttatatcaataattaataattggcctagt 21267796  T
Q  164 ggtat 168  Q
    |||||    
T  21267795 ggtat 21267791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 31642952 - 31642864
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 152  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| | ||  |||||||||||    
T  31642952 cagtggcagatcttgagttaatttgttggggatgccaaacttttatggaatatatattaactggtttcaagtattattaataattaata 31642864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 26074929 - 26075034
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 163  Q
    |||||||||||||| ||| ||||| |||||  || |||| | |||||||||||||||||||||||||||||||||| |||||||| |||| |  ||||||    
T  26074929 cagtggcggatcttaagtaaattttttggga-tgtcaaattcctatggaatatatattaaatggtttcaagaagtatcaataatttataaccggcctagt 26075027  T
Q  164 ggtataa 170  Q
    |||||||    
T  26075028 ggtataa 26075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 26098716 - 26098821
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 163  Q
    |||||||||||||| ||| ||||| |||||  || |||| | |||||||||||||||||||||||||||||||||| |||||||| |||| |  ||||||    
T  26098716 cagtggcggatcttaagtaaattttttggga-tgtcaaattcctatggaatatatattaaatggtttcaagaagtatcaataatttataaccggcctagt 26098814  T
Q  164 ggtataa 170  Q
    |||||||    
T  26098815 ggtataa 26098821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 9698090 - 9698153
Alignment:
Q  71 ggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaag 134  Q
    |||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  9698090 ggatcttgagttaatttgttggaggtgcaaaaattttatggaatatatattaaatggtttcaag 9698153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 21510339 - 21510268
Alignment:
Q  68 ggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagta 139  Q
    ||||||||||||||  |||||||||||||| |||||  ||||| ||||||||||||||||||||||||||||    
T  21510339 ggcggatcttgagtatatttgttgggggtgtcaaaccactatgaaatatatattaaatggtttcaagaagta 21510268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 27348271 - 27348212
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    |||| ||||||||||||| |||||||||||||||||||| || |||| ||||||||||||    
T  27348271 cagtagcggatcttgagtaaatttgttgggggtgccaaaattttatgaaatatatattaa 27348212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 44598731 - 44598695
Alignment:
Q  66 gtggcggatcttgagttaatttgttgggggtgccaaa 102  Q
    ||||||||||||||||||||||||| |||||||||||    
T  44598731 gtggcggatcttgagttaatttgttaggggtgccaaa 44598695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 47535504 - 47535444
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    |||||||||||||||| ||| ||| |||||||| || ||||  ||||||||||||||||||    
T  47535504 cagtggcggatcttgacttattttcttgggggtaccgaactattatggaatatatattaaa 47535444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 7356270 - 7356231
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaac 103  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  7356270 cagtggcggatcttgagtaaatttattgggggtgccaaac 7356231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 38826223 - 38826282
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    |||||||||||||||||||| ||| | | |||| ||||| ||||||| ||||||||||||    
T  38826223 cagtggcggatcttgagttattttctcgagggtaccaaaattctatgaaatatatattaa 38826282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 8061545 - 8061499
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatg 110  Q
    ||||| || |||||||||||||||||||| |||| ||||||||||||    
T  8061545 cagtgacgtatcttgagttaatttgttggaggtgtcaaacttctatg 8061499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 18774867 - 18774829
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaa 102  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  18774867 cagtggcggatcttgagtaattttgttgggggtgccaaa 18774829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 30682654 - 30682585
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    ||||||| |||||||||||| |||||||| |||||||||  | | ||||||| ||||||||  |||||||    
T  30682654 cagtggcagatcttgagttattttgttggaggtgccaaatatttgtggaataaatattaaacagtttcaa 30682585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 34535297 - 34535261
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaac 103  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  34535297 tggcggatcttgagtaaatttattgggggtgccaaac 34535261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 27084263 - 27084353
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataat 154  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| | |||||||||||||||||    
T  27084263 cagtggcgaatcttgagttaatttgttgggggtgccaaacttttatggaatatatatcaaatggttttaagtattaacaataattaataat 27084353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 24887989 - 24888076
Alignment:
Q  65 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 152  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| | || ||||||||||||    
T  24887989 agtggcggatcttgagttaatttgttgggggtgccaaaattttatggaatatatattaactggtttcaagtattatcaataattaata 24888076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 12826570 - 12826670
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 163  Q
    |||||| ||||||||||||||||||||| ||||| | || ||||||  ||||||||||||| ||||||| |||| |||||||| ||||||||  ||||||    
T  12826570 cagtggtggatcttgagttaatttgttgcgggtgtcgaaattctataaaatatatattaaacggtttcatgaagcaacaataactaataatcggcctagt 12826669  T
Q  164 g 164  Q
    |    
T  12826670 g 12826670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 24643625 - 24643697
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaa 136  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||| | |||||||||||| ||||||||||||    
T  24643625 cagtggcggatcttgacttaattttttgggggtgccaaatttctacgtaatatatattaactggtttcaagaa 24643697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 25431141 - 25431054
Alignment:
Q  65 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 152  Q
    |||||||||| |||||||||||||| |||||||||||  || ||||||||||||||||| ||||||||||   || ||||||||||||    
T  25431141 agtggcggattttgagttaatttgtcgggggtgccaatattttatggaatatatattaactggtttcaagtgttatcaataattaata 25431054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 33011815 - 33011905
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 153  Q
    |||||| |||||||||| | ||||||||||||||  ||||||||||||||||||||||||||  |||| ||||| |||||| || ||||||    
T  33011815 acagtgacggatcttgaataaatttgttgggggtatcaaacttctatggaatatatattaaacagttttaagaaataacaacaaataataa 33011905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 8789873 - 8789796
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaa 140  Q
    ||||||||||||||||| ||| ||| |||| |||||||||||  ||||||||||||||| ||  |||||||| |||||    
T  8789873 acagtggcggatcttgacttattttcttggtggtgccaaactattatggaatatatattcaaatgtttcaagtagtaa 8789796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 24915664 - 24915702
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaa 102  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  24915664 cagtggcggatcttgagttattttgttgggggtgccaaa 24915702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 35890910 - 35890971
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    ||||||| ||||||||| ||| ||| ||||||||||| ||||  ||||||||||||||||||    
T  35890910 acagtggtggatcttgacttattttcttgggggtgccgaactattatggaatatatattaaa 35890971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 35958799 - 35958868
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    |||||||||||||||||| | ||||||||||||||||||  || || ||||||||| ||||  |||||||    
T  35958799 cagtggcggatcttgagtaattttgttgggggtgccaaatatcgatagaatatataataaacagtttcaa 35958868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 5643232 - 5643292
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||| ||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||||    
T  5643232 acagtggtggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaa 5643292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 30732007 - 30732063
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 120  Q
    |||||||||||||||| | ||| |||||||||||||||| || |||| |||||||||    
T  30732007 cagtggcggatcttgattaaatctgttgggggtgccaaaattgtatgtaatatatat 30732063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 35396614 - 35396574
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaac 103  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  35396614 acagtggcggatcttgagtgaatttattgggggtgccaaac 35396574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 5572543 - 5572602
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||||||||||||  || ||| |||||||||||||| || |||| ||||||||||||    
T  5572543 cagtggcggatcttgaaatattttattgggggtgccaaaattgtatgaaatatatattaa 5572602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 10890711 - 10890640
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaaga 135  Q
    ||||||||||||||||  || ||| |||||||||||| | || |||| |||||||||||| | |||||||||    
T  10890711 cagtggcggatcttgaaatattttcttgggggtgccagaattgtatgaaatatatattaagttgtttcaaga 10890640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 13280189 - 13280122
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    ||||||||||| |||||||| ||||||  |||| |||||||| |||| |||||||||||||  |||||||    
T  13280189 cagtggcggattttgagttattttgtt--gggtaccaaacttttatgaaatatatattaaactgtttcaa 13280122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 47000 - 46960
Alignment:
Q  62 cacagtggcggatcttgagttaatttgttgggggtgccaaa 102  Q
    |||||||||||||||| ||||| ||||||||||||| ||||    
T  47000 cacagtggcggatcttaagttattttgttgggggtgtcaaa 46960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 16978338 - 16978298
Alignment:
Q  63 acagtggcggatcttgagttaa-tttgttgggggtgccaaa 102  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  16978338 acagtggcggatcttgagttaattttgttgggggtaccaaa 16978298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 21519638 - 21519578
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    |||||||||||||||| ||| ||| |||| ||| || ||||  ||||||||||||||||||    
T  21519638 cagtggcggatcttgacttattttcttggaggtaccgaactattatggaatatatattaaa 21519578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 28702233 - 28702319
Alignment:
Q  66 gtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 152  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | || ||||||||||||    
T  28702233 gtggcggatcttgagttaatttgttgggggtgccaaacttttatggaatatatatttaatggtttcaagtattatcaataattaata 28702319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 14876784 - 14876857
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaag 137  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14876784 cagtggcggatcttgacttaatttgttgggggtgccaaacttctatgtaatatatattaaatggtttcaagaag 14876857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 23826270 - 23826182
Alignment:
Q  65 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 153  Q
    |||||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  23826270 agtggcagatcttgagttaacttattgtgggtgccaaacttctatggaatatatattaaacgatttcaagaagtaacaataattaataa 23826182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 34870707 - 34870603
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 163  Q
    |||||| ||||||||||| || |||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||  | |||||    
T  34870707 cagtggtggatcttgagtaaaattgttgggggtgtcaaacttctatggaatatatattgaatgatttcaagaattaacaataattaataattgatctagt 34870608  T
Q  164 ggtat 168  Q
    |||||    
T  34870607 ggtat 34870603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 50432636 - 50432531
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctag 162  Q
    ||||| |||||||||||||||| |||||||||||||||||  | ||||||||||||||||||||||||||| || || |||| |||||||| || |||||    
T  50432636 acagttgcggatcttgagttaaattgttgggggtgccaaatatatatggaatatatattaaatggtttcaaaaaatatcaattattaataaccatcctag 50432537  T
Q  163 tggtat 168  Q
    ||||||    
T  50432536 tggtat 50432531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 29773786 - 29773681
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctag 162  Q
    |||||| || |||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||   || ||||||||||||||  ||||||    
T  29773786 acagtgacgaatcttgagttaaattcttgggggtgccaaatttctatggaatatatattaaatgatttcaagttatatcaataattaataattgacctag 29773687  T
Q  163 tggtat 168  Q
    ||||||    
T  29773686 tggtat 29773681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 52453677 - 52453764
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaat 151  Q
    ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| | || |||||||||||    
T  52453677 cagtgacggattttgagttaatttgttgggggtgccaaacttttatggaatatatattaactggtttaaagtattatcaataattaat 52453764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 49290000 - 49289899
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtggt 166  Q
    |||||||||||||||||| ||||||| |||||||||  | |||| |||||||||||||||||||||| || || |||| |||| |||||| |||||||||    
T  49290000 tggcggatcttgagttaaattgttggaggtgccaaatatatatgaaatatatattaaatggtttcaaaaaatatcaattattattaatcatcctagtggt 49289901  T
Q  167 at 168  Q
    ||    
T  49289900 at 49289899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 171234 - 171149
Alignment:
Q  65 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaat 151  Q
    |||||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||| |||||||  | ||||||||||||||    
T  171234 agtggcggatcttgagttaatttgttggga-tgccaaacctttatggaatatatattaaattgtttcaaatattaacaataattaat 171149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 29663840 - 29663906
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||    
T  29663840 tggcggatcttgagttaatttgctgggggtgccaaacttttatggaatatatattatatggtatcaa 29663906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 10778507 - 10778453
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatat 118  Q
    |||||||||||||||||| |||||||||||||||||||||| | ||| |||||||    
T  10778507 cagtggcggatcttgagtaaatttgttgggggtgccaaactaccatgaaatatat 10778453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 44352232 - 44352288
Alignment:
Q  66 gtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    |||||||||||||||||| ||| |||||| ||||||| ||||||| ||||||||||||    
T  44352232 gtggcggatcttgagttattttcttgggg-tgccaaaattctatgaaatatatattaa 44352288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 15554460 - 15554528
Alignment:
Q  71 ggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagta 139  Q
    ||||||| ||| |||||||||||||||||||||   |||| |||||||||||||   ||||||||||||    
T  15554460 ggatcttaagtaaatttgttgggggtgccaaaccattatgaaatatatattaaacaatttcaagaagta 15554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 42138592 - 42138652
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    |||||||||||||||| ||| ||| ||||||||  ||||||  ||||||||||||||||||    
T  42138592 cagtggcggatcttgatttattttcttgggggtatcaaactattatggaatatatattaaa 42138652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 3712857 - 3712819
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaa 102  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  3712857 cagtggcggatcttgagttatttttttgggggtgccaaa 3712819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 4808569 - 4808524
Alignment:
Q  107 tatggaatatatattaaatggtttcaagaagtaacaataattaata 152  Q
    |||| ||||||||||||||||||||||| | || ||||||||||||    
T  4808569 tatgaaatatatattaaatggtttcaagtattatcaataattaata 4808524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 25244926 - 25244886
Alignment:
Q  62 cacagtggcggatcttgagttaatttgttgggggtgccaaa 102  Q
    |||||||||||||||| | ||| ||||||||||||||||||    
T  25244926 cacagtggcggatcttaacttattttgttgggggtgccaaa 25244886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 44091276 - 44091217
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    |||||||||||||||||| |||||||| ||||| ||||| || |||| |||||| ||||||    
T  44091276 cagtggcggatcttgagtaaatttgtt-ggggtaccaaaattgtatgtaatataaattaaa 44091217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 47476612 - 47476556
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 120  Q
    |||||||||||||||||||  ||||||||||||| ||||  | | ||||||||||||    
T  47476612 cagtggcggatcttgagtttttttgttgggggtgtcaaatatttgtggaatatatat 47476556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 16717264 - 16717159
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 163  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  | ||||| |  |||||||||| | ||||    
T  16717264 cagtggcggatcttgagttaatttgttgggggtgccaaacttttatggaatatatattaaatggtatcaaatattaacagtgtttaataatcagcttagt 16717165  T
Q  164 ggtata 169  Q
    ||||||    
T  16717164 ggtata 16717159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 19645517 - 19645448
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  19645517 cagtggcggatcttgagttaatttgttgggggtgccaaacttttatggaatatatattaaatggtatcaa 19645448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 32632997 - 32633096
Alignment:
Q  71 ggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtggtataa 170  Q
    |||| |||||||| ||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||||||| |   ||||||||||||    
T  32632997 ggatattgagttattttgttgggggtgccaatcatctatgtaatatatattaaacggtttcaagaagtaacaataattaataaccggtctagtggtataa 32633096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 15107859 - 15107759
Alignment:
Q  66 gtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtgg 165  Q
    |||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||||||| |  || ||||||||||||| || | ||||||    
T  15107859 gtggcggatcttcaattaatttgttgggg-tgtcaaacttctatggaatatatattaaatggtttcaatagatatcaataattaataaccatcttagtgg 15107761  T
Q  166 ta 167  Q
    ||    
T  15107760 ta 15107759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 28866167 - 28866226
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||    
T  28866167 cagtggcggatcttgagtaaattttttgggg-tgccaaacttctatggaatatatattaaa 28866226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 18768229 - 18768283
Alignment:
Q  70 cggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    |||||||||| | ||||| |||||||||||||||||| |||||||||||||||||    
T  18768229 cggatcttgaataaattttttgggggtgccaaacttccatggaatatatattaaa 18768283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 14317035 - 14316976
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||||||||||||||||| ||| |||||| ||||||| ||||||| ||||||||||||    
T  14317035 acagtggcggatcttgagttatttttttgggg-tgccaaaattctatgaaatatatattaa 14316976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 38054372 - 38054318
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatat 118  Q
    |||||||||||||||||| |||||||||||| ||||||||| | ||| |||||||    
T  38054372 cagtggcggatcttgagtaaatttgttggggatgccaaactaccatgaaatatat 38054318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 4306880 - 4306937
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    ||||||||||||||||| ||| | |||||| ||||| ||||||| |||||||||||||    
T  4306880 tggcggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaaa 4306937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 24441801 - 24441870
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    |||||||||||||||||| | ||||||||||||||||||  || || ||||||||| ||||  |||||||    
T  24441801 cagtggcggatcttgagtaattttgttgggggtgccaaatatcgatagaatatataataaacagtttcaa 24441870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 32151180 - 32151241
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    ||||||||||||||||| ||| ||| ||||||||||| ||||  ||||||||||||| ||||    
T  32151180 acagtggcggatcttgacttattttcttgggggtgccgaactattatggaatatatactaaa 32151241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 2985758 - 2985698
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||||||||||||||||| ||| |||||||| |||||  | |||| ||||||||||||    
T  2985758 acagtggcggatcttgagttattttcttgggggtaccaaaagtttatgaaatatatattaa 2985698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 15497687 - 15497747
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||||||||||||||||| ||| |  ||||| ||||| ||||||| ||||||||||||    
T  15497687 acagtggcggatcttgagttattttctcaggggtaccaaaattctatgaaatatatattaa 15497747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 29986803 - 29986764
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaac 103  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  29986803 cagtggcggatcttgagtaaatttattgggggtgccaaac 29986764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 16633626 - 16633664
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaa 102  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  16633626 cagtggcggatcttgagtaattttgttgggggtgccaaa 16633664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 34731919 - 34731849
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaag 134  Q
    |||||||||||||||| ||| ||| |||||||| || ||||  ||||||||||||||| ||  ||||||||    
T  34731919 cagtggcggatcttgacttattttcttgggggtaccgaactattatggaatatatattcaaacgtttcaag 34731849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 37022786 - 37022824
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaa 102  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  37022786 cagtggcggatcttgagtttatttcttgggggtgccaaa 37022824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 43541276 - 43541206
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    ||||||||||||||||||| | ||||||| ||||||||||  || || ||||||||| ||||  |||||||    
T  43541276 acagtggcggatcttgagtaattttgttgagggtgccaaatatcgatagaatatataataaacagtttcaa 43541206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 4819902 - 4819833
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    |||||||||||||||||| | ||||||||||||| ||||  || || ||||||||| ||||  |||||||    
T  4819902 cagtggcggatcttgagtaattttgttgggggtgtcaaatatcgatagaatatataataaacagtttcaa 4819833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 32274979 - 32275040
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    ||||||||||||||||||||  ||| |||||| |||||||| | | || |||||||||||||    
T  32274979 acagtggcggatcttgagtttttttcttggggatgccaaacatttttgaaatatatattaaa 32275040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 8209957 - 8209925
Alignment:
Q  70 cggatcttgagttaatttgttgggggtgccaaa 102  Q
    |||||||||||||||||||||||||||| ||||    
T  8209957 cggatcttgagttaatttgttgggggtgtcaaa 8209925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 13760335 - 13760391
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 120  Q
    |||||||||||||||| | |||||||| ||||||||||| |  |||| |||||||||    
T  13760335 cagtggcggatcttgattaaatttgttcggggtgccaaaatggtatgtaatatatat 13760391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 15917340 - 15917280
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||| ||||||||||||| ||| | |||||| ||||| ||||||| |||||| |||||    
T  15917340 acagtggtggatcttgagttattttctcgggggtaccaaaattctatgaaatatacattaa 15917280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 36560858 - 36560798
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    |||||||||||||||| ||| ||| || ||||| ||||||   ||||||||||||||||||    
T  36560858 cagtggcggatcttgatttattttcttaggggtaccaaacagttatggaatatatattaaa 36560798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 32786611 - 32786697
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataat 154  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  32786611 tggcggatcttgagttaatttgttaggg-tgtcaaacttctatggaatatatattaaacggtttcaagaagtaaaaataattaataat 32786697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 20612960 - 20613049
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 153  Q
    |||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||  |||| || || ||| ||||| ||||||    
T  20612960 cagtggcggatcttgagtaaattttttgggggtgccaaacttccatggaatatatattaaacagttttaataactaaaaataaataataa 20613049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 6719788 - 6719875
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataat 154  Q
    ||||||||||||||||||||| || ||||||   ||||| |||||||||||||||||||||||||||||||   || ||||||||||||||    
T  6719788 cagtggcggatcttgagttaaattcttgggg---ccaaatttctatggaatatatattaaatggtttcaagttatatcaataattaataat 6719875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 14533845 - 14533759
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 152  Q
    |||||||| |||||||||||||||||||| || ||||| ||||   ||||||||||||||| |||||||||| | || ||||||||||||    
T  14533845 acagtggcagatcttgagttaatttgttgaggatgccatactt---tggaatatatattaactggtttcaagtattatcaataattaata 14533759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 32125919 - 32125965
Alignment:
Q  93 gggtgccaaacttctatggaatatatattaaatggtttcaagaagta 139  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  32125919 gggtgccaaacttctatggaatatatattaaacggtttcaggaagta 32125965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 2753740 - 2753680
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||||||||||||||||| ||| |||||||| |||||  | |||| ||||||||||||    
T  2753740 acagtggcggatcttgagttattttcttgggggtaccaaaagtttatgaaatatatattaa 2753680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 33582876 - 33582820
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 120  Q
    |||||||||||||||| ||| ||| |||||||||||||||   ||||||||||||||    
T  33582876 cagtggcggatcttgatttatttttttgggggtgccaaacagttatggaatatatat 33582820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 30590215 - 30590253
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaa 102  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  30590215 cagtggcggatcttgagttatttttttgggggtgccaaa 30590253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 13647501 - 13647444
Alignment:
Q  66 gtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    |||| ||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||||    
T  13647501 gtggtggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaa 13647444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 34385163 - 34385223
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||| ||||||||||||| | | | |||||| ||||| ||||||| ||||||||||||    
T  34385163 acagtggtggatcttgagttattatctcgggggtaccaaaattctatgaaatatatattaa 34385223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 50070247 - 50070176
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaaga 135  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50070247 cagtggcggatcttgacttaatttgttgggggtgccaaacttctatgtaatatatattaaatggtttcaaga 50070176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 29924629 - 29924525
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 163  Q
    ||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||| ||||||||  || || ||| |||||||  |||||||    
T  29924629 cagtggcggatcttgagttaaatttttgggggtgtcaaacttctatgaaatatatattaaatgatttcaagatatatcagtaaataataattgacctagt 29924530  T
Q  164 ggtat 168  Q
    |||||    
T  29924529 ggtat 29924525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 33226345 - 33226277
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttca 132  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  33226345 cagtggcggatcttgacttaaattgttgggggtgccaaacttctatgtaatatatattaaatggtttca 33226277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 49497738 - 49497649
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 153  Q
    ||||||||||||||||||||| |||||||||||| ||||| | |||| ||||||||||||||||||| ||||| || |||| ||||||||    
T  49497738 cagtggcggatcttgagttaaattgttgggggtgtcaaacatatatgaaatatatattaaatggttttaagaaatatcaattattaataa 49497649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 19097299 - 19097196
Alignment:
Q  65 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtg 164  Q
    ||||| |||||||||||||| |||||||| ||| ||||| | |||||||||||||||||||||||||||||| ||  ||| |||||||| |  |||||||    
T  19097299 agtggtggatcttgagttaaattgttgggagtgtcaaacatatatggaatatatattaaatggtttcaagaaatattaattattaataaccctcctagtg 19097200  T
Q  165 gtat 168  Q
    ||||    
T  19097199 gtat 19097196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 47383878 - 47383945
Alignment:
Q  69 gcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaa 136  Q
    ||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  47383878 gcggatcttgacttaatttgttgggggtaccaaatttctatgtaatatatattaaatggtttcaagaa 47383945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 26494776 - 26494694
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataa 146  Q
    |||||||||||||||||| ||||| |||||||||||||||||  |||||||||||||||||  |||| ||||| |||||||||    
T  26494776 cagtggcggatcttgagtaaattttttgggggtgccaaactttcatggaatatatattaaacagttttaagaactaacaataa 26494694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 13564467 - 13564530
Alignment:
Q  71 ggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaag 134  Q
    |||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  13564467 ggatcttgagttaatttgttggaggtgcaaaaattttatggaatatatattaaatggtttcaag 13564530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 46851865 - 46851949
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 153  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  | |||||||| ||||||| ||| | || |||||||||||||    
T  46851865 tggcggatcttgagttaatttgttgggggtgccaaacttttatg--aaatatattatatggttttaagtattatcaataattaataa 46851949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 52489818 - 52489881
Alignment:
Q  69 gcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttca 132  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||    
T  52489818 gcggatcttgagttaatttgttaggggtgtcaaacttctatggaatgtatattaaacggtttca 52489881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 30828636 - 30828547
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 153  Q
    ||||||||||||||||| |||||||||||||| || |||| ||||||| ||||||||||||||| ||||||||| ||  | ||||||||||    
T  30828636 acagtggcggatcttgacttaatttgttgggg-tgtcaaatttctatgtaatatatattaaatgatttcaagaaatagtagtaattaataa 30828547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 37986928 - 37987010
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataa 146  Q
    ||||| |||||||||||| ||||| |||||||||||||||||| |||||||||||||||||  |||| || || |||||||||    
T  37986928 cagtgacggatcttgagtaaattttttgggggtgccaaacttccatggaatatatattaaacagttttaaaaactaacaataa 37987010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 2930316 - 2930383
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttc 131  Q
    |||||||||||||| ||||||||| ||| |||||||||||| ||||||||||| |||||| |||||||    
T  2930316 cagtggcggatcttcagttaatttattgagggtgccaaactcctatggaatatgtattaagtggtttc 2930383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 31523228 - 31523173
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatata 119  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  31523228 cagtggtggatcttgagttaatttgttgggagtgccaaacttttatggaatatata 31523173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 52797632 - 52797733
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtggt 166  Q
    ||||||||||| ||||||| | |||| | || |||| || ||||||||||||||||||| ||||| |||| ||| |||||||||||||  | ||||||||    
T  52797632 tggcggatcttaagttaatgttttggagatgtcaaatttttatggaatatatattaaatagtttcgagaattaataataattaataattgatctagtggt 52797731  T
Q  167 at 168  Q
    ||    
T  52797732 at 52797733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 13442267 - 13442198
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaaga 135  Q
    |||||||||||||||||| ||||| ||| ||||| ||||||||||||||||  |||||||||| ||||||||    
T  13442267 cagtggcggatcttgagtaaattttttgagggtgtcaaacttctatggaat--atattaaatgatttcaaga 13442198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 50720128 - 50720188
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||||||||||||||||| ||| ||| |||||||||| ||||||| ||||||||||||    
T  50720128 acagtggcggatcttgagttattttcttgtgggtgccaaaattctatgaaatatatattaa 50720188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 37818674 - 37818727
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 120  Q
    ||||||||||||||| |||||||||||||||||||||  ||||| |||||||||    
T  37818674 tggcggatcttgagtaaatttgttgggggtgccaaaccactatgaaatatatat 37818727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 29132979 - 29132908
Alignment:
Q  62 cacagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    |||||||||||||||||||| | ||||||||||||||||||  || || ||||||||| ||||  |||||||    
T  29132979 cacagtggcggatcttgagtaattttgttgggggtgccaaatatcgatagaatatataataaacagtttcaa 29132908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 49908435 - 49908494
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    |||||||||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||||    
T  49908435 cagtggcggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaa 49908494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 29096458 - 29096400
Alignment:
Q  66 gtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    |||||||||||| ||| || || || ||||||||||||||| |||||||||||||||||    
T  29096458 gtggcggatcttaagtaaaattttttggggtgccaaacttccatggaatatatattaaa 29096400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 14968206 - 14968137
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    |||||||||||||||||| | ||||||||||||||||||  || || ||||||||| ||||  |||||||    
T  14968206 cagtggcggatcttgagtaattttgttgggggtgccaaatatcgatagaatatataataaacagtttcaa 14968137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 5517146 - 5517202
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||||    
T  5517146 tggcggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaa 5517202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 6211699 - 6211759
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||||||||||||||||| ||| | |||||| | |||||||| || ||||||||||||    
T  6211699 acagtggcggatcttgagttattttctcgggggtacaaaacttctttgaaatatatattaa 6211759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 12679888 - 12679948
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||||||||||||||||| ||| | |||||| ||||| |||| || ||||||||||||    
T  12679888 acagtggcggatcttgagttattttctcgggggtaccaaaattctttgaaatatatattaa 12679948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 2930401 - 2930436
Alignment:
Q  118 tattaaatggtttcaagaagtaacaataattaataa 153  Q
    |||||| |||||||||||||||||||||||||||||    
T  2930401 tattaagtggtttcaagaagtaacaataattaataa 2930436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 17555331 - 17555277
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatatt 121  Q
    ||||||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||    
T  17555331 tggcggatcttgagttattttctcgggggtaccaaaattctatgaaatatatatt 17555277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 27993623 - 27993692
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    ||||||||||||||||  | |||| ||||||||||||||  | | ||||||||||||||||  |||||||    
T  27993623 cagtggcggatcttgatatcattttttgggggtgccaaatatttgtggaatatatattaaaacgtttcaa 27993692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 40704975 - 40704918
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 120  Q
    |||||||||||||||   | |||||||||||||||||||||||   ||||||||||||    
T  40704975 acagtggcggatcttagctaaatttgttgggggtgccaaacttgcctggaatatatat 40704918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 53436540 - 53436580
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaac 103  Q
    ||||||||||||||||||| ||||| || ||||||||||||    
T  53436540 acagtggcggatcttgagtaaatttattaggggtgccaaac 53436580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 54085525 - 54085453
Alignment:
Q  71 ggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaa 143  Q
    ||||||||| | | |||||||||||||||||| || |||| |||||||||| ||  ||||||| | |||||||    
T  54085525 ggatcttgattaattttgttgggggtgccaaaattgtatgcaatatatattgaaccgtttcaacatgtaacaa 54085453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 4580554 - 4580658
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 163  Q
    ||||||||||||||||||||| |||||||||||||||||  | |||| |||||||||||||||||||||| || || |||| |||| |||||| ||||||    
T  4580554 cagtggcggatcttgagttaaattgttgggggtgccaaatatatatgaaatatatattaaatggtttcaaaaaatatcaattattattaatcatcctagt 4580653  T
Q  164 ggtat 168  Q
    |||||    
T  4580654 ggtat 4580658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 38972215 - 38972319
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 163  Q
    ||||| ||||||||||||||| ||||||||| |||||||| | |||||||||||||||||||||||||||||| || |||| |||||||| |  ||||||    
T  38972215 cagtgacggatcttgagttaaattgttggggatgccaaacatatatggaatatatattaaatggtttcaagaaatatcaattattaataaccgtcctagt 38972314  T
Q  164 ggtat 168  Q
    |||||    
T  38972315 ggtat 38972319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 4056207 - 4056296
Alignment:
Q  65 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataat 154  Q
    |||||| ||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||  ||| |||||||||||||    
T  4056207 agtggcagatcttgagttaaattcttgggggtgccaaatttctatgaaatatatattaaatggtttcaagatataataataattaataat 4056296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 9615681 - 9615753
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgcc-aaacttctatggaatatatattaaatggtttcaag 134  Q
    |||||||||||||||||||||| || ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  9615681 acagtggcggatcttgagttaaattcttgggggtgccaaaatttctatggaatatatattaaatggtttcaag 9615753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 38575567 - 38575655
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 153  Q
    |||||||||||||| | ||||||||||||||  |||||||||||||| |||||||||||||| |||| ||||||||  ||| ||||||||    
T  38575567 cagtggcggatcttaacttaatttgttggggc-gccaaacttctatgaaatatatattaaatagttttaagaagtagtaatgattaataa 38575655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 30076216 - 30076300
Alignment:
Q  62 cacagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataa 146  Q
    |||||||||||||||||||| ||||| || || |||||||||||| |||||||||||||||||  |||| || || |||||||||    
T  30076216 cacagtggcggatcttgagtaaattttttaggagtgccaaacttccatggaatatatattaaacagttttaaaaattaacaataa 30076300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 1315238 - 1315149
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 153  Q
    ||||| |||||||||  |||| |||||||||||||||||| | |||| ||||||||||||||||||| || || || |||| ||||||||    
T  1315238 cagtgacggatcttggattaaattgttgggggtgccaaacatatatgaaatatatattaaatggttttaaaaaatatcaattattaataa 1315149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 6590472 - 6590403
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    |||||||||||||||| ||||||| | |||||||||||| ||||| | |||||||||||| |||||||||    
T  6590472 cagtggcggatcttgaattaatttttcgggggtgccaaatttctacgtaatatatattaactggtttcaa 6590403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 5890708 - 5890605
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtggt 166  Q
    ||||||||||||||| ||| | ||| |||||||||| ||| ||||||||||||||||   |||| ||||| ||||||||| ||||||  || |||||||     
T  5890708 tggcggatcttgagtaaatcttttgagggtgccaaaattccatggaatatatattaaccagttttaagaactaacaataaataataactaatctagtggc 5890609  T
Q  167 ataa 170  Q
    ||||    
T  5890608 ataa 5890605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 31162322 - 31162377
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 120  Q
    |||||||||||||||| | |||||||||||||||||||| || |||| |||||||||    
T  31162322 cagtggcggatcttgattaaatttgttgggggtgccaaa-ttgtatgtaatatatat 31162377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 12060133 - 12060094
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaac 103  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  12060133 cagtggcggatcttgagtgaatttattgggggtgccaaac 12060094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 17302996 - 17303047
Alignment:
Q  73 atcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    ||||||||| ||||  || ||| |||||||||||||||||||||||||||||    
T  17302996 atcttgagtaaattctttagggatgccaaacttctatggaatatatattaaa 17303047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 42834734 - 42834675
Alignment:
Q  65 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 124  Q
    ||||||||||||||| ||| ||| ||||||||||| ||||  ||||||||||||| ||||    
T  42834734 agtggcggatcttgacttattttcttgggggtgccgaactattatggaatatatactaaa 42834675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 32399268 - 32399198
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaag 134  Q
    |||||| ||||||||| | ||||| ||||||||||||||  | |||| | ||||||||||| |||||||||    
T  32399268 cagtggtggatcttgaataaatttattgggggtgccaaaaatatatgtattatatattaaacggtttcaag 32399198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 31266618 - 31266565
Alignment:
Q  67 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 120  Q
    |||| |||||||| ||||||| ||| ||||||||||| | ||||||||||||||    
T  31266618 tggcagatcttgacttaatttcttgtgggtgccaaacgtttatggaatatatat 31266565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 19761 - 19834
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaag 137  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  19761 cagtggcggatcttgacttaaattgttgggggtgccaaacttctatgtaatatatattaaatggtttcatgaag 19834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 35996 - 35908
Alignment:
Q  64 cagtggcggatcttgagttaatttgtt-gggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaat 151  Q
    |||||||||||||||||| ||||| || |||||||||||||||| ||| |||||||||||||  |||| || || ||||||||| ||||    
T  35996 cagtggcggatcttgagtaaatttttttgggggtgccaaacttccatgaaatatatattaaacagttttaaaaactaacaataaataat 35908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 63813 - 63873
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 123  Q
    ||||||||||||||| ||||| ||| | |||||| ||||||||||||| ||||||||||||    
T  63813 acagtggcggatctttagttattttctcgggggtaccaaacttctatgaaatatatattaa 63873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 64791 - 64721
Alignment:
Q  63 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 133  Q
    ||||||||||||||||||| | ||||||||||||||||||  || || ||||||||| ||||  |||||||    
T  64791 acagtggcggatcttgagtaattttgttgggggtgccaaatatcgatagaatatataataaacagtttcaa 64721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 230649 - 230611
Alignment:
Q  64 cagtggcggatcttgagttaatttgttgggggtgccaaa 102  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  230649 cagtggcggatcttgagtttatttcttgggggtgccaaa 230611  T

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