View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18421_low_9 (Length: 509)

Name: NF18421_low_9
Description: NF18421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18421_low_9
NF18421_low_9
[»] chr3 (3 HSPs)
chr3 (70-461)||(19468942-19469333)
chr3 (142-232)||(43808393-43808483)
chr3 (17-51)||(19469397-19469431)
[»] chr4 (16 HSPs)
chr4 (124-461)||(47866183-47866520)
chr4 (70-125)||(47865981-47866036)
chr4 (146-232)||(37148039-37148125)
chr4 (458-496)||(14223168-14223206)
chr4 (458-492)||(14208741-14208775)
chr4 (458-492)||(14209692-14209726)
chr4 (458-492)||(14210643-14210677)
chr4 (458-492)||(14211612-14211646)
chr4 (458-492)||(14212563-14212597)
chr4 (458-492)||(14213532-14213566)
chr4 (458-492)||(14214500-14214534)
chr4 (458-492)||(14215469-14215503)
chr4 (458-492)||(14216438-14216472)
chr4 (458-492)||(14217389-14217423)
chr4 (458-492)||(14219310-14219344)
chr4 (458-492)||(14220279-14220313)
[»] chr2 (2 HSPs)
chr2 (165-233)||(39357073-39357141)
chr2 (458-492)||(31408959-31408993)


Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 70 - 461
Target Start/End: Complemental strand, 19469333 - 19468942
Alignment:
Q  70 aaaaacaaatcacgatgaaatagggagtgagagagaacaaagcctcgtgggaaataataaacaggaatgcaattagcttgttaagaaccgcatcaaactc 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19469333 aaaaacaaatcacgatgaaatagggagtgagagagaacaaagcctcgtgggaaataataaacaggaatgcaattagcttgttaagaaccgcatcaaactc 19469234  T
Q  170 ggaatcagggttgttgatcaaaggacaagttaggaaatggtaggcaagcagggtttgaatgttatgagagagtggaaaccgaagggtgaagctgcagaat 269  Q
    | |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19469233 gaaatcagagttgttgatcaaaggaccagttaggaaatggtaggcaagcagggtttgaatgttatgagagagtggaaactgaagggtgaagctgcagaat 19469134  T
Q  270 gattgaaaacgtatatatttacccaagggatgcataaagccttgcgttggaaacatacacatttaatcagatgcacacttatttttctgcatgggttata 369  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19469133 gattggaaacgtatatatttacccaagggatgcataaagccttgcgttggaaacatacacatttaatcagatgcacacttatttttctgcatgggttata 19469034  T
Q  370 ccaaaggtatagtgatagcagccatacagattttttgaaattgaaataatcttgcattatctcggtagtgtaataggtcatgtgaaggaaat 461  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19469033 ccaaaggtttagtgatagcagccatatggattttttgaaattgaaataatcttgcattatctcggtagtgtaataggccatgtgaaggaaat 19468942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 43808393 - 43808483
Alignment:
Q  142 ttagcttgttaagaaccgcatcaaactcggaatcagggttgttgatcaaaggacaagttaggaaatggtaggcaagcagggtttgaatgtt 232  Q
    |||||||||| ||||| | ||||||||||   |||||||||||||| |||||||  |||||| ||| ||||||||| ||||||||||||||    
T  43808393 ttagcttgttgagaacagtatcaaactcgctctcagggttgttgattaaaggaccggttagggaatcgtaggcaaggagggtttgaatgtt 43808483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 19469431 - 19469397
Alignment:
Q  17 agggagaacaaagaaattgcaataatcagtaaaaa 51  Q
    |||||||||||||||||||||||||||||||||||    
T  19469431 agggagaacaaagaaattgcaataatcagtaaaaa 19469397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 124 - 461
Target Start/End: Original strand, 47866183 - 47866520
Alignment:
Q  124 taataaacaggaatgcaattagcttgttaagaaccgcatcaaactcggaatcagggttgttgatcaaaggacaagttaggaaatggtaggcaagcagggt 223  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  47866183 taataaacaggaatgcaattagcctgttaagaaccgcatcaaactcggaatcagagttgttgatcaaaggaccagataggaaatggtaggcaagcagggt 47866282  T
Q  224 ttgaatgttatgagagagtggaaaccgaagggtgaagctgcagaatgattgaaaacgtatatatttacccaagggatgcataaagccttgcgttggaaac 323  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||    
T  47866283 ttgaatgttatgagagagtggaaactgaagggtgaagttgcagaatgattggaagcgtatatatttacacaagggatgcataaagccttgcgttggaaac 47866382  T
Q  324 atacacatttaatcagatgcacacttatttttctgcatgggttataccaaaggtatagtgatagcagccatacagattttttgaaattgaaataatcttg 423  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||| |||||||||||||||||    
T  47866383 atacacatttaattagatgcacacttatttttctgcatgggttataccaaaggtttagtgatagcagccatatggatttttttaaattgaaataatcttg 47866482  T
Q  424 cattatctcggtagtgtaataggtcatgtgaaggaaat 461  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  47866483 cattatctcggtagtgtaataggccatgtgaaggaaat 47866520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 47865981 - 47866036
Alignment:
Q  70 aaaaacaaatcacgatgaaatagggagtgagagagaacaaagcctcgtgggaaata 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47865981 aaaaacaaatcacgatgaaatagggagtgagagagaacaaagcctcgtgggaaata 47866036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 37148039 - 37148125
Alignment:
Q  146 cttgttaagaaccgcatcaaactcggaatcagggttgttgatcaaaggacaagttaggaaatggtaggcaagcagggtttgaatgtt 232  Q
    |||||| ||||| | ||||||||||   ||| |||||||||| ||||||| | ||||| ||||||||||||| ||||||||||||||    
T  37148039 cttgttgagaacagtatcaaactcgctctcatggttgttgattaaaggaccacttagggaatggtaggcaaggagggtttgaatgtt 37148125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 496
Target Start/End: Original strand, 14223168 - 14223206
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagctgat 496  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14223168 aaatgcacagcatgaataagtcttccgcaccaagctgat 14223206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 14208741 - 14208775
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  14208741 aaatgcacagcatgaataagtcttccgcaccaagc 14208775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 14209692 - 14209726
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  14209692 aaatgcacagcatgaataagtcttccgcaccaagc 14209726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 14210643 - 14210677
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  14210643 aaatgcacagcatgaataagtcttccgcaccaagc 14210677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 14211612 - 14211646
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  14211612 aaatgcacagcatgaataagtcttccgcaccaagc 14211646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 14212563 - 14212597
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  14212563 aaatgcacagcatgaataagtcttccgcaccaagc 14212597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 14213532 - 14213566
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  14213532 aaatgcacagcatgaataagtcttccgcaccaagc 14213566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 14214500 - 14214534
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  14214500 aaatgcacagcatgaataagtcttccgcaccaagc 14214534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 14215469 - 14215503
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  14215469 aaatgcacagcatgaataagtcttccgcaccaagc 14215503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 14216438 - 14216472
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  14216438 aaatgcacagcatgaataagtcttccgcaccaagc 14216472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 14217389 - 14217423
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  14217389 aaatgcacagcatgaataagtcttccgcaccaagc 14217423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 14219310 - 14219344
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  14219310 aaatgcacagcatgaataagtcttccgcaccaagc 14219344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 14220279 - 14220313
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  14220279 aaatgcacagcatgaataagtcttccgcaccaagc 14220313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 39357141 - 39357073
Alignment:
Q  165 aactcggaatcagggttgttgatcaaaggacaagttaggaaatggtaggcaagcagggtttgaatgtta 233  Q
    |||||||| ||| |||||||||||||||||| | ||||| |||||||||  |||| |||||||||||||    
T  39357141 aactcggagtcaaggttgttgatcaaaggaccatttaggcaatggtaggacagcaaggtttgaatgtta 39357073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 31408959 - 31408993
Alignment:
Q  458 aaatgcacagcatgaataagccttccgcaccaagc 492  Q
    |||||||||||||||||||| ||||||||||||||    
T  31408959 aaatgcacagcatgaataagtcttccgcaccaagc 31408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University