View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18422_high_14 (Length: 252)
Name: NF18422_high_14
Description: NF18422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18422_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 41657364 - 41657596
Alignment:
| Q |
1 |
attgctaggtctaaggcctctgcaattagggttatggaatatcaattagaaaattgcgttcaaatattttcgataaagagaaaacaaagtgcaactataa |
100 |
Q |
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| T |
41657364 |
attgctagttctaaggcctctgcaattagggttatggaatatcaattagaaaattgcgttcaaatattttcgataaagagaaaacaaagtgcaactataa |
41657463 |
T |
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| Q |
101 |
ttttaattacttgctcttgttgtttcaatttaatttaagtcaattcccacaatcatctcgatataagatataggatcaactgcgagatttcttggcatgg |
200 |
Q |
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| T |
41657464 |
ttttaattacttgctcttgttgtttcgatttaatttaagtcaattcccacaatcatctcgatataagatataggatcaactgcgagatttcttggcatgg |
41657563 |
T |
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| Q |
201 |
taaaaccaagatagttgttacaatgaatcataaaac |
236 |
Q |
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| T |
41657564 |
taaaaccaagata---gttacaatgaatcataaaac |
41657596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 41659007 - 41659181
Alignment:
| Q |
45 |
attagaaaattgcgttcaaatattttcgataaagagaaaacaaagtgcaactataattttaattacttgctcttgttgtttcaattta---atttaagtc |
141 |
Q |
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| T |
41659007 |
attagtaaattgcgttcaaatactttcaatgaagagaaaacagagtgcaactatagttttaattacttgttcttgttgtttcaatttaaatatttaagtc |
41659106 |
T |
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| Q |
142 |
aattcccacaatcatctcgatataagatataggatcaactgcgagatttcttggcatggtaaaaccaagatagtt |
216 |
Q |
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| T |
41659107 |
atttctcacaagattctcaatataagatatagggccaaatgtgagatttattggcataataaaaccaagatagtt |
41659181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41658545 - 41658592
Alignment:
| Q |
1 |
attgctaggtctaaggcctctgcaattagggttatggaatatcaatta |
48 |
Q |
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| T |
41658545 |
attgctaggtctaaggcctctgcgattggggccatggaatatcaatta |
41658592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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