View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18422_high_3 (Length: 474)
Name: NF18422_high_3
Description: NF18422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18422_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 9794837 - 9795297
Alignment:
| Q |
1 |
acaagattccttaactcttctagtcttccccaaacaagaaagcaaaatgttgtaactgattgaagttggaaaaaccttataagacctcatctccatcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9794837 |
acaagattccttaactcttctagtcttccccaaacaagaaagcaaaatgttgtaactgattgaagttggaaaaaccttataagacctcatctccatcatc |
9794936 |
T |
|
| Q |
101 |
acattcaaagcttccggcataagtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactaaatctggggtta |
200 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9794937 |
acattcaaagcttccagcacaagtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactaaatctggggtta |
9795036 |
T |
|
| Q |
201 |
ccccatttgtcttcatctcttgaataattctcctagattcctttacattcctctccagagaccaaccataaagaagacttctataaacacaaggtagcgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9795037 |
ccccatttgtcttcatctcttgaataattctccaagattccttcacattcctctccaaagaccaaccataaagaagacttctataaacacaaggtagcac |
9795136 |
T |
|
| Q |
301 |
tcctttaatcttgtctttgtgatgccaagctacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9795137 |
tcctttaatcttgtctttgtgatgccaaactacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattca |
9795236 |
T |
|
| Q |
401 |
tcaataagacatttatacttatccaaattcttgaaaatacccaatgcttcgtcttcttttc |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9795237 |
tcaataagacatttatacttatccaaattcttgaaaatacccaatgcttcgtcttcttttc |
9795297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 45146198 - 45145738
Alignment:
| Q |
1 |
acaagattccttaactcttctagtcttccccaaacaagaaagcaaaatgttgtaactgattgaagttggaaaaaccttataagacctcatctccatcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45146198 |
acaagattccttaactcttctagtcttccccaaacaagaaagcaaaatgttgtaactgattgaagttggaaaaaccttataagacctcatctccatcatc |
45146099 |
T |
|
| Q |
101 |
acattcaaagcttccggcataagtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactaaatctggggtta |
200 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45146098 |
acattcaaagcttcctgcacaagtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactatatctggggtta |
45145999 |
T |
|
| Q |
201 |
ccccatttgtcttcatctcttgaataattctcctagattcctttacattcctctccagagaccaaccataaagaagacttctataaacacaaggtagcgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45145998 |
ccccatttgtcttcatctcttgaataattctcctagattccttcacattcctctccatagaccaaccataaagaagacttctataaacacaaggtagctc |
45145899 |
T |
|
| Q |
301 |
tcctttaatcttgtctttgtgatgccaagctacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45145898 |
tcctttaatcttgtctttgtgatgccaatctacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattca |
45145799 |
T |
|
| Q |
401 |
tcaataagacatttatacttatccaaattcttgaaaatacccaatgcttcgtcttcttttc |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45145798 |
tcaataagacatttatacttatccaaattcttgaaaatacccaatgcttcgtcttcttttc |
45145738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University