View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18422_high_5 (Length: 381)
Name: NF18422_high_5
Description: NF18422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18422_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 28429351 - 28429002
Alignment:
| Q |
11 |
cacagaatagcactttgaatcttacatctttctctccagtttccctgcacgtacatgattcaatttaacaaatataatgccaattaaattaatatctata |
110 |
Q |
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| T |
28429351 |
cacaaaatagcactttgaatcttacatctttctctccagtttccctgcacgtacatgattcaatttaataaatataatgccaattaaattaatatctata |
28429252 |
T |
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| Q |
111 |
tttcatatcatcactcctaacaagttatcatgtacaatgcctccaaatattaatagactcatttgtaag-nnnnnnntatccatttttccaaaatatctt |
209 |
Q |
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| T |
28429251 |
ttacatatcatcactcctaacaagttatcatgtacaatacctccaaatattaatagactcatttgtaagaaaaaaaatatccctttttcc-aaatatctt |
28429153 |
T |
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| Q |
210 |
caaatatgctgaagttgaaatttgaatttacaattctccacttttatttactttcgtagtgtgtgtaagtttcgccgttacagtttataatataaaaggn |
309 |
Q |
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| T |
28429152 |
caaatatgctgaagttgaaatttgaatttacaattctccact----tttacttccgtagtgtgtgtaagtttcgccgttacagtttataatataaaag-- |
28429059 |
T |
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| Q |
310 |
nnnnnnnnnngagcatggatctactacaagtacaaaataattttttaactttgtttt |
366 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
28429058 |
aaaaaaaaaagagcatggaactactacaagtacaacataattttttaactttgtttt |
28429002 |
T |
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