View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18422_high_9 (Length: 302)

Name: NF18422_high_9
Description: NF18422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18422_high_9
NF18422_high_9
[»] scaffold0667 (2 HSPs)
scaffold0667 (17-182)||(4135-4295)
scaffold0667 (181-288)||(3795-3902)
[»] chr2 (21 HSPs)
chr2 (17-183)||(9320660-9320824)
chr2 (17-182)||(9328280-9328441)
chr2 (181-288)||(9320380-9320487)
chr2 (19-82)||(9274277-9274340)
chr2 (17-88)||(7115969-7116040)
chr2 (17-182)||(9315709-9315861)
chr2 (19-95)||(12012851-12012927)
chr2 (19-95)||(11987789-11987865)
chr2 (17-96)||(9291685-9291764)
chr2 (181-288)||(9327979-9328086)
chr2 (17-95)||(12006418-12006496)
chr2 (17-174)||(9284490-9284639)
chr2 (17-182)||(9294940-9295097)
chr2 (106-179)||(10371532-10371604)
chr2 (25-89)||(10352879-10352943)
chr2 (17-68)||(10347552-10347603)
chr2 (117-176)||(12019264-12019323)
chr2 (27-68)||(10371625-10371666)
chr2 (43-182)||(9061482-9061618)
chr2 (45-95)||(12019216-12019266)
chr2 (17-66)||(10335649-10335698)
[»] chr1 (3 HSPs)
chr1 (67-157)||(29468109-29468199)
chr1 (106-174)||(29453663-29453730)
chr1 (106-175)||(29443680-29443748)
[»] chr3 (1 HSPs)
chr3 (13-80)||(37462244-37462312)


Alignment Details
Target: scaffold0667 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 4295 - 4135
Alignment:
Q  17 cttcctttcctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtactttttattcattatcctagtttattgagtttttgc 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||   ||||| ||||| | ||||| || |||||||||    
T  4295 cttcctttcctgttgataattctagtaagaaggagaatcatacatgcaagagcaagaaaaggtac---ttattgattat-cgagttttttcagtttttgc 4200  T
Q  117 tatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaactctgtgcta 182  Q
    | ||||| ||||||||| | ||||||||||||||||||||| |||||  |||||||||||||||||    
T  4199 tgtgtataagttaatat-ctgttcaatggacccatcatatgatttatttagttaaactctgtgcta 4135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 3902 - 3795
Alignment:
Q  181 tatgaattgacaacaatttatgcaatgtgacagcgcattcttctctttgcgtcatgtcattttatgtacttgcctcatcctaatggcaaaatgtctttta 280  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  3902 tatgaattgacaacaatgtatgcaatgtgacagcaaattcttctctttgcatcatgtcatttcatgaacttgcctcatcctaatggcaaaatgactttta 3803  T
Q  281 ttattgtt 288  Q
    ||||||||    
T  3802 ttattgtt 3795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 9320824 - 9320660
Alignment:
Q  17 cttcctttcctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtactttttattcattatcctagtttattgagtttttgc 116  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||| || || ||||| ||||||| ||||||||||||    
T  9320824 cttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgtt-ttgattatactagttttttgagtttttgc 9320726  T
Q  117 tatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaactctgtgctat 183  Q
    |||||||||||| || | || |||||||||||||||||||| | |||  ||||||||||| ||||||    
T  9320725 tatgtattagttgatgt-caattcaatggacccatcatatgatatattaagttaaactctatgctat 9320660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 9328441 - 9328280
Alignment:
Q  17 cttcctttcctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtactttttattcattatcctagtttattgagtttttgc 116  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || || |||||   ||||| ||||||||||||    
T  9328441 cttccttccctgttgataattctaggaagaaggagaatcgtacaagcaagagcaagagaaggtacttctt-ttgattat--gagttttttgagtttttgc 9328345  T
Q  117 tatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaactctgtgcta 182  Q
    ||||||| |||| || | || |||||||||||| ||||||| | |||| ||||||||||| |||||    
T  9328344 tatgtataagttgatgt-caattcaatggacccgtcatatgatatatgaagttaaactctatgcta 9328280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 9320487 - 9320380
Alignment:
Q  181 tatgaattgacaacaatttatgcaatgtgacagcgcattcttctctttgcgtcatgtcattttatgtacttgcctcatcctaatggcaaaatgtctttta 280  Q
    |||||||||||| |||| ||||| |||||| |||  |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||| |    
T  9320487 tatgaattgacagcaatgtatgctatgtgatagcaaattcttctctttgcatcatgtcattttatgtacttgcctcaccctaatggaaaaatgactttca 9320388  T
Q  281 ttattgtt 288  Q
    ||||||||    
T  9320387 ttattgtt 9320380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 9274340 - 9274277
Alignment:
Q  19 tcctttcctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtact 82  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9274340 tccttccctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtact 9274277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 7115969 - 7116040
Alignment:
Q  17 cttcctttcctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtactttttat 88  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  7115969 cttccttccctgttgataattgtaggaagaaggagaatcatacaagcaagagcaagagaaggtacttcttat 7116040  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 9315861 - 9315709
Alignment:
Q  17 cttcctttcctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtactttttattcattatcctagtttattgagtttttgc 116  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||   ||||  |||||         ||||||||||||    
T  9315861 cttccttccctgttgattattgtaggaagaaggagaatcatacaagcaagaacaagagaaggtac---ttatatattat---------ttgagtttttgc 9315774  T
Q  117 tatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaactctgtgcta 182  Q
    ||||||| ||||||| | ||||||||||||||||||||||| | || | ||||||||||| |||||    
T  9315773 tatgtataagttaatgt-cagttcaatggacccatcatatgatataagtagttaaactctatgcta 9315709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 12012851 - 12012927
Alignment:
Q  19 tcctttcctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtactttttattcattat 95  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||| |||||    
T  12012851 tccttccctgttgataattctaggaagaaggggaatcattcaagcaagagcaagagaaggtacttcttattgattat 12012927  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 11987789 - 11987865
Alignment:
Q  19 tcctttcctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtactttttattcattat 95  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||| ||||| |||||    
T  11987789 tccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgattat 11987865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 9291764 - 9291685
Alignment:
Q  17 cttcctttcctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtactttttattcattatc 96  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| | |||||| |||||| ||||||| ||||| ||||||    
T  9291764 cttccttccctgttgataattgtaggaagaaggagaatcatacgaacaagagaaagaaacggtacttcttattgattatc 9291685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 9328086 - 9327979
Alignment:
Q  181 tatgaattgacaacaatttatgcaatgtgacagcgcattcttctctttgcgtcatgtcattttatgtacttgcctcatcctaatggcaaaatgtctttta 280  Q
    |||||||||||| |||| ||||| |||||| ||   ||| |||||||||| |||||||||||||||||||||||||| |||||||  |||||  |||| |    
T  9328086 tatgaattgacagcaatgtatgctatgtgatagaaaattattctctttgcatcatgtcattttatgtacttgcctcaccctaatgaaaaaatcactttca 9327987  T
Q  281 ttattgtt 288  Q
    ||||||||    
T  9327986 ttattgtt 9327979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 12006418 - 12006496
Alignment:
Q  17 cttcctttcctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtactttttattcattat 95  Q
    ||||||| |||||||| |||| || |||||||||||||| ||||||||||||||||| ||||||||| ||||| |||||    
T  12006418 cttccttccctgttgagaattgtacgaagaaggagaatcgtacaagcaagagcaagagaaggtacttcttattgattat 12006496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 9284490 - 9284639
Alignment:
Q  17 cttcctttcctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtactt-tttattcattatcctagtttattgagtttttg 115  Q
    ||||||| ||||||||||||||||| ||||||||||||| |  |||||||||||||| ||||||||| |||||| ||||||  |||        ||||||    
T  9284490 cttccttccctgttgataattctagtaagaaggagaatcgtttaagcaagagcaagagaaggtacttctttattgattatctgagt--------tttttg 9284581  T
Q  116 ctatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaact 174  Q
    || ||||| ||||||| |  |||| ||||||||||||||||  |||||| |||||||||    
T  9284582 ctttgtataagttaat-tttagtttaatggacccatcatataatttatgtagttaaact 9284639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 9294940 - 9295097
Alignment:
Q  17 cttcctttcctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtactt-tttattcattatcctagtttattgagtttttg 115  Q
    ||||||| ||||||||||||||||| ||||||||||||| |  |||||||||||||| ||||||||| |||||| ||||||  |||        ||||||    
T  9294940 cttccttccctgttgataattctagtaagaaggagaatcgtttaagcaagagcaagagaaggtacttctttattgattatctgagt--------tttttg 9295031  T
Q  116 ctatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaactctgtgcta 182  Q
    || ||||| ||||||| |  |||| ||||||||||||||||  ||||||  |||||||||| |||||    
T  9295032 ctttgtataagttaat-tttagtttaatggacccatcatataatttatgtggttaaactctatgcta 9295097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 10371604 - 10371532
Alignment:
Q  106 tgagtttttgctatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaactctgtg 179  Q
    |||||||||| | ||||| |||||||||| ||||||||||| |||||||||  | |||||||||||||||||||    
T  10371604 tgagtttttgttgtgtataagttaatatc-agttcaatggatccatcatattatatatgcagttaaactctgtg 10371532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 10352943 - 10352879
Alignment:
Q  25 cctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtactttttatt 89  Q
    ||||||||||||  ||||||| ||||||||| ||||||| ||||| ||||||||||||| |||||    
T  10352943 cctgttgataatcgtaggaagcaggagaatcctacaagcgagagcgagaaaaggtacttcttatt 10352879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 10347603 - 10347552
Alignment:
Q  17 cttcctttcctgttgataattctaggaagaaggagaatcatacaagcaagag 68  Q
    ||||||| ||||||||||||  ||||||||||||||||||| ||||||||||    
T  10347603 cttccttccctgttgataatcgtaggaagaaggagaatcatccaagcaagag 10347552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 12019264 - 12019323
Alignment:
Q  117 tatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaactct 176  Q
    ||||||| |||||| ||||| |||||||||||||||||||| | |||| |||||||||||    
T  12019264 tatgtataagttaacatccaattcaatggacccatcatatgatatatgtagttaaactct 12019323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 10371666 - 10371625
Alignment:
Q  27 tgttgataattctaggaagaaggagaatcatacaagcaagag 68  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  10371666 tgttgataatggtaggaagaaggagaatcatacaagcaagag 10371625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 9061482 - 9061618
Alignment:
Q  43 aagaaggagaatcatacaagcaagagcaagaaaaggtactttttattcattatcctag---tttattgagtttttgctatgtattagttaatatccagtt 139  Q
    ||||||||||||| ||||||||||| ||||| |||||||   ||||| |||||   ||   ||| ||||||||||||||||||| |||| || | |||||    
T  9061482 aagaaggagaatcgtacaagcaagaccaagagaaggtac---ttattgattatatgagtttttttttgagtttttgctatgtataagttgatgt-cagtt 9061577  T
Q  140 caatggacccatcatatggtttatgcagttaaactctgtgcta 182  Q
    ||||||  |||||||||  | |||| ||||||||||| |||||    
T  9061578 caatgg--ccatcatataatatatgtagttaaactctatgcta 9061618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 12019216 - 12019266
Alignment:
Q  45 gaaggagaatcatacaagcaagagcaagaaaaggtactttttattcattat 95  Q
    ||||||||||| |||||| |||||||||| ||||||||| ||||| |||||    
T  12019216 gaaggagaatcgtacaagaaagagcaagagaaggtacttcttattgattat 12019266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 10335698 - 10335649
Alignment:
Q  17 cttcctttcctgttgataattctaggaagaaggagaatcatacaagcaag 66  Q
    ||||||| ||||||||||||  |||||||||| |||||| ||||||||||    
T  10335698 cttccttacctgttgataatcgtaggaagaagcagaatcgtacaagcaag 10335649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 29468109 - 29468199
Alignment:
Q  67 agcaagaaaaggtactttttattcattatcctagtttattgagtttttgctatgtattagttaatatc-cagttcaatggacccatcatatg 157  Q
    ||||||| ||||||||| ||||| ||| ||  ||||| ||||||||||| ||||||| |||||||||| ||||| |||||||| ||||||||    
T  29468109 agcaagagaaggtacttcttattgattgtctgagttttttgagtttttgttatgtataagttaatatcacagtt-aatggacctatcatatg 29468199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 29453663 - 29453730
Alignment:
Q  106 tgagtttttgctatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaact 174  Q
    |||||||||||| ||||| ||||||| || |||||||| || |||||||||| | ||||||||||||||    
T  29453663 tgagtttttgctctgtataagttaatttc-agttcaatagatccatcatatgatatatgcagttaaact 29453730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 29443680 - 29443748
Alignment:
Q  106 tgagtttttgctatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaactc 175  Q
    ||||||||| || ||||| |||||||||| | |||||||||||||||||||| | |||  ||||||||||    
T  29443680 tgagttttttctttgtataagttaatatcaa-ttcaatggacccatcatatgatatatctagttaaactc 29443748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 37462312 - 37462244
Alignment:
Q  13 atcacttcctttcc-tgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggta 80  Q
    ||||| |||||||| ||||||||||| ||||||||||||| |    |||||||||||||||| ||||||    
T  37462312 atcacctcctttccctgttgataattgtaggaagaaggaggacaggacaagcaagagcaagagaaggta 37462244  T

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