View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18422_low_1 (Length: 593)
Name: NF18422_low_1
Description: NF18422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18422_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 32049359 - 32049918
Alignment:
| Q |
1 |
agcgcaagtcattgttctgcacaatgttgaaggggaaatgtgagaggattgtgtgagatttagagaatcttgaggtagcaaacatgataacttttaggaa |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
32049359 |
agcgcgagtcattgttctgcacaatgttgaagagagaatgtgagaggattgtgtgagatttagagaatcttaagatagcaaacatgataacttttaggaa |
32049458 |
T |
|
| Q |
101 |
atttaaaggccag-gggttaagggtccttgaatgagatttttggatagagaagcacattataaacacttttgaatagtaagatctcattagtagaagaat |
199 |
Q |
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| ||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||| ||||||||||||||||||||| |
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| T |
32049459 |
acttaaagggcaaagggttaagggtccttgaatgagatttttggatagagaaacacattataaacaattt-gagtagtgagatctcattagtagaagaat |
32049557 |
T |
|
| Q |
200 |
ttaagttttctcttaacttatcttgcgatcttcacgttggttgagaaagacttnnnnnnngatagaaattaaggtttgctgttgaagagctcttaaagtt |
299 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |
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| T |
32049558 |
ttaaattttctcttaacttatcttgcgatcttcacgttggttgagaaagacttaaaaaaagatagaaattagggtttgctgttgaagagctcttgaagtt |
32049657 |
T |
|
| Q |
300 |
aattttcttataacttctttgtatctcttgtaaagactcattcataattgattgtgagttgttctcttccgtagacataggccaatttcaatctaagtag |
399 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
32049658 |
aattttcttataacttctttgtatcttttgtaaagactcattcataatggattgtgagttgttctcttccgtagacataagtcaatttcaatctaagtag |
32049757 |
T |
|
| Q |
400 |
gttgacaatcttagtatgtttgctcctctattctttcatctttattctttggttatgattgagattgtgctatacacacaaattgatagacttgttcttg |
499 |
Q |
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|| |||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| | || | ||||||||||||||||||||||||||||||| |
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| T |
32049758 |
gtagacaatcttagtgtgtttcctcctctattctttcatctttgttctttggttatgattggggttttactatacacacaaattgatagacttgttcttg |
32049857 |
T |
|
| Q |
500 |
gttaaacagtgttgcttgaattatttggttgttgattgttgttgttattttctctatatct |
560 |
Q |
| |
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| T |
32049858 |
gttaaacagtgttgcttgaattatttggttgttgattgttgttgttattttctttatatct |
32049918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 26310481 - 26310420
Alignment:
| Q |
283 |
gaagagctcttaaagttaattttcttataacttctttgtatctcttgtaaagactcattcata |
345 |
Q |
| |
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||||||||||| ||| |||||| ||| ||||||||||||||||||| |||||||| ||||||| |
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| T |
26310481 |
gaagagctcttgaagctaattt-cttgtaacttctttgtatctcttttaaagacttattcata |
26310420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 27493121 - 27493063
Alignment:
| Q |
268 |
ttaaggtttgctgttgaagagctcttaaagttaattttcttataacttctttgtatctct |
327 |
Q |
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| T |
27493121 |
ttaaggtttgatattgtagagctcttaaagtcaattt-cttgtaacttctttgtatctct |
27493063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 39989832 - 39989869
Alignment:
| Q |
310 |
taacttctttgtatctcttgtaaagactcattcataat |
347 |
Q |
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||||||||||||||||||||||||||| |||| ||||| |
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| T |
39989832 |
taacttctttgtatctcttgtaaagacccattaataat |
39989869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 48099092 - 48099040
Alignment:
| Q |
292 |
ttaaagttaattttcttataacttctttgtatctcttgtaaagactcattcata |
345 |
Q |
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|||||||||||||| || |||||| ||| |||||||||||||| |||||||||| |
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| T |
48099092 |
ttaaagttaatttt-ttgtaacttatttttatctcttgtaaaggctcattcata |
48099040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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