View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18422_low_11 (Length: 296)
Name: NF18422_low_11
Description: NF18422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18422_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 9794814 - 9794536
Alignment:
| Q |
1 |
aatctggtgttgctccagattgggttagctattatctggtagcaagggttttgtttctgagtggtagatttggtaaagggaaagagatagtggatcaaat |
100 |
Q |
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| T |
9794814 |
aatctggtgttgctccagattgggttagctattatctggtgtcaagggttttgtttttgagtggtagatttggtaaagggaaagagatagtggatcaaat |
9794715 |
T |
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| Q |
101 |
gattgaaaaaggtttggtaccaaaccataagttttattacagtttgattggtattctctatggggttgaaagggtaaatcatgctcttgatttgtttgag |
200 |
Q |
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| T |
9794714 |
gattgaaaaaggtttggtaccaaaccataagttttattacagtttgattggtattctctgtggggttgaaagggtaaatcatgctcttgatttgtttgag |
9794615 |
T |
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| Q |
201 |
aaaatgaaaggaagctcagtgggaggttatggactggtttatgatgtgctcattccaaagctttatagaggaggggatt |
279 |
Q |
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| T |
9794614 |
aaaatgaaaggaagctcagtgggaggttatggaccggtttatgatgtgctcattccaaagctttgtagaggaggggatt |
9794536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 45146221 - 45146495
Alignment:
| Q |
1 |
aatctggtgttgctccagattgggttagctattatctggtagcaagggttttgtttctgagtggtagatttggtaaagggaaagagatagtggatcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45146221 |
aatctggtgttgctccagattgggttagctattatctggtgacaagggttttgtttatgagtggtagatttggtaaagggaaagagatagtggatcaaat |
45146320 |
T |
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| Q |
101 |
gattgaaaaaggtttggtaccaaaccataagttttattacagtttgattggtattctctatggggttgaaagggtaaatcatgctcttgatttgtttgag |
200 |
Q |
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| T |
45146321 |
gattgaaaaaggtttggtaccaaaccataagttttattacagtttgattggtattctctgtggggttgaaagggtaaatcatgctcttgatttgtttgag |
45146420 |
T |
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| Q |
201 |
aaaatgaaaggaagctcagtgggaggttatggactggtttatgatgtgctcattccaaagctttatagaggaggg |
275 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
45146421 |
aaaatgaaaggaagctcagtgggaggttatggaccggtttatgatgtgctcattccaaagctttgtagaggaggg |
45146495 |
T |
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