View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18422_low_2 (Length: 504)
Name: NF18422_low_2
Description: NF18422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18422_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 32758851 - 32758358
Alignment:
| Q |
1 |
atgaaacgaaaaagtaatcaaaatgcaaattatttgaatgtttacatgtggattcattagcaccatggtccgagnnnnnnngaagtttatcacgttatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
32758851 |
atgaaacgaaaaagtaatcaaaatgcaaattatttgaatgtttacatgtggattcattagcaccatggtccgagaaaaaaagaagtttatcacgtgatac |
32758752 |
T |
|
| Q |
101 |
atcacacaaacaaaccatagacggacaaccctaaccaagtaaccat---------tagacatcatgtctctttccttcggttgatttttgatgcataaac |
191 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32758751 |
atcaca--aacaaaccatagacggacaaccctaaccaagtaaccatagtaaccattagacatcatgtctctttccttcggttgatttttgatgcataaac |
32758654 |
T |
|
| Q |
192 |
aatctcgagagcatgtaaagcaagaaaattgaaatattataacttcacaaattgtaagttaatggtagaacaaaacatggagaaagaatgaatgggaaat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32758653 |
aatctcgagagcatgtaaagcaagaaaattgaaatattataacttcacagattgtaagttaatggtagaacaaaacatggagaaagaatgaatgggaaat |
32758554 |
T |
|
| Q |
292 |
aatcgcataatataatcaacacttatgcaaggaatgattatttctgtacgtagtagacattagagagcttgtgtttatacgaatgcataataaacacaac |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
32758553 |
aatcgcataatataatcaacacttatgcaaggaatgattatttctgtacgtagtagacattagagagcttgtgtttatacgaatgcataataaacagaac |
32758454 |
T |
|
| Q |
392 |
atacgaacgttgnnnnnnnaataaaaagtcaactaaattttaagttggcaattcacacaatacaagagggtagcgggtttaaccgctaaacatagt |
487 |
Q |
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| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32758453 |
acaagaacgttgtttttttaataaaaagtcaactaaattttaagttggcaattcacacaatacaagagggtagtgggtttaaccgctaaacatagt |
32758358 |
T |
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