View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18422_low_5 (Length: 391)
Name: NF18422_low_5
Description: NF18422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18422_low_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 41656880 - 41657288
Alignment:
| Q |
1 |
agaacttttgttgaaggaacgattgagaacagagatacctcttccaagggtatctatccccttatataaaagactacacc---tttcacacaaagaataa |
97 |
Q |
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| T |
41656880 |
agaacttttgctgaaggaacgattgagaacagagatacctcttccaagggtatctatccccttatataaaagactacaccacctttcacacaaaaaataa |
41656979 |
T |
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| Q |
98 |
aaaatttatgcatggtatccccctcaaaaagcctaaactatcctcttactaaccgtctaattttccctaaccaatttcccatctctataaaccaccaacg |
197 |
Q |
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| T |
41656980 |
aaaatttatgcatggtatccccctcaaaaagcctaaactatcctcttactaactgtttaattttccctaaccaatttcccatctctataaaccgccaacg |
41657079 |
T |
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| Q |
198 |
ttatttctgtgct-----atttattccaaccactcagcagctagtatgaaaggatt------atccagaagtccagacctaactttgaccttattgtatg |
286 |
Q |
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| T |
41657080 |
ttatttgtgtgctatttaatttattccaaccactcagcagctagtatgaaaggattatccagatccagaagtccagacctaactttgaccttattgtatg |
41657179 |
T |
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| Q |
287 |
caagttaggcatgtttggaatccatcaattaaatgtc----accaaccatacataacatataagtatctcagatcacagcagaagtagaaacatatcata |
382 |
Q |
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| T |
41657180 |
caagttaggcatgtttggaatccatcaattaaatgtcaccaaccaaccatacataacatataagtttctcagatcacagcagaagtagaaacatatcata |
41657279 |
T |
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| Q |
383 |
tcacatatc |
391 |
Q |
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| T |
41657280 |
tcacatatc |
41657288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 41658382 - 41658433
Alignment:
| Q |
340 |
atataagtatctcagatcacagcagaagtagaaacatatcatatcacatatc |
391 |
Q |
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| T |
41658382 |
atataagtatcacagatcaaagcagaagtagaaatatatcatatcacatatc |
41658433 |
T |
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