View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18422_low_7 (Length: 371)
Name: NF18422_low_7
Description: NF18422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18422_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 40660207 - 40659877
Alignment:
| Q |
18 |
gcatgcacctgatcatgatggtcatcgtggatgacatgctgcaaatccaactgtgcctgggcttttgtggattcataacgcgatgatgatgcaacaaatg |
117 |
Q |
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| T |
40660207 |
gcatgcacctgatcatgatggtcatcgtggatgacatgctgcaaatccaactgtgcctgggcttttgtggattcataacgcgatgatgatgcaacaaatg |
40660108 |
T |
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| Q |
118 |
gctgagaagaagatcgaaaggtgtgagaagaagagtggtggttgatgaatgttgatcctgatcctagcaacaagctagctagcttactttgaaggtgctg |
217 |
Q |
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| T |
40660107 |
gctga---------------------gaagaagagtggcggttgatgaatgttgatcctgatcctagtaacaagctagctagcttactttgaaggtgctg |
40660029 |
T |
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| Q |
218 |
gtgattaggaactaa---ggtcttagaccttctcaataacaaggatgccatattctattcagtcacaatttcacagggaaatgaaaatgctataatagaa |
314 |
Q |
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| T |
40660028 |
gtgattaggaactaataaggtcttagaccttctcaataacaaggatgccatattctattcagtcaaaatttcacagggaaatgaaaatgctataatagaa |
40659929 |
T |
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| Q |
315 |
aaatttatgatgggaaaaggacaatttctagtagtcagccattattttcttc |
366 |
Q |
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| T |
40659928 |
aaatttatgatgggaaaaggacaaattctagtagtcagccattattttcttc |
40659877 |
T |
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